SMTL ID : 8u31.1

Crystal structure of PD-1 in complex with a Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain B: S.166, S.180, S.181, T.182 Chain C: L.155, F.180, P.181, V.183, S.191, L.192, S.193 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:P.181, C:S.191, C:S.193, B:S.166, B:T.182, B:T.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.C. et al., Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability. Mabs (2024)

Release Date

2024-06-19

Peptides

Programmed cell death protein 1: A
Fab light chain: B
Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Programmed cell death protein 1

Fab light chain

Fab heavy chain

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