SMTL ID : 8u57.1

PPARg LBD in complex with perfluorooctanoic acid (PFOA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x 8PF: pentadecafluorooctanoic acid(Non-covalent)

8PF.1: 9 residues within 4Å: Chain A: V.106, T.110, K.114, V.128, L.131, K.132, L.281, I.285 Ligands: 8PF.5 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.114 Salt bridges: A:K.114 Halogen bonds: A:T.110, A:V.128 8PF.2: 10 residues within 4Å: Chain A: E.72, R.93, I.94, G.97, C.98, R.101, I.154, S.155, M.161 Ligands: 8PF.3 2 PLIP interactions: 2 interactions with chain A Halogen bonds: A:R.93, A:I.94 8PF.3: 16 residues within 4Å: Chain A: C.98, R.101, S.102, I.139, Y.140, L.143, L.146, L.153, I.154, S.155, F.176, M.177, K.180, H.262 Ligands: 8PF.2, D1D.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.155 Water bridges: A:E.156 8PF.5: 9 residues within 4Å: Chain A: V.106, T.110, V.128, L.131, K.132, L.281, E.284, I.285 Ligands: 8PF.1 1 PLIP interactions: 1 interactions with chain A Halogen bonds: A:V.128

1 x D1D: (4S,5S)-1,2-DITHIANE-4,5-DIOL(Non-covalent)

D1D.4: 10 residues within 4Å: Chain A: F.39, P.40, R.101, A.105, E.108, I.139, M.142, L.143, L.146 Ligands: 8PF.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.101, A:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pederick, J.L. et al., A structural basis for the activation of peroxisome proliferator-activated receptor gamma (PPAR gamma ) by perfluorooctanoic acid (PFOA). Chemosphere (2024)

Release Date

2024-07-24

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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