SMTL ID : 8u85.1

Structural Basis of Human NOX5 Activation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x HEB: HEME B/C(Non-covalent)

HEB.1: 18 residues within 4Å: Chain A: K.225, G.228, L.231, N.232, S.279, H.282, T.283, H.286, S.322, G.325, V.326, L.328, L.329, L.332, L.366, H.369, G.370, P.371 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:L.231, A:L.231, A:T.283, A:H.286, A:V.326, A:L.328, A:L.332, A:L.366, A:L.366 Hydrogen bonds: A:N.232, A:H.369 Salt bridges: A:K.225, A:K.225 pi-Stacking: A:H.369, A:H.369, A:H.369 pi-Cation interactions: A:H.282, A:H.369 Metal complexes: A:H.282 HEB.2: 15 residues within 4Å: Chain A: I.238, M.242, H.268, Q.269, G.272, Y.273, L.332, M.335, F.336, S.339, F.352, H.356, Y.359, V.362, F.384 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:I.238, A:I.238, A:M.242, A:L.332, A:F.336, A:F.352, A:F.352, A:Y.359, A:Y.359, A:V.362, A:F.384 Salt bridges: A:H.444 pi-Stacking: A:F.352, A:Y.359 pi-Cation interactions: A:H.356 Metal complexes: A:H.268 HEB.7: 18 residues within 4Å: Chain C: K.225, G.228, L.231, N.232, S.279, H.282, T.283, H.286, S.322, G.325, V.326, L.328, L.329, L.332, L.366, H.369, G.370, P.371 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:L.231, C:L.231, C:T.283, C:H.286, C:V.326, C:L.328, C:L.332, C:L.366, C:L.366 Hydrogen bonds: C:N.232, C:H.369 Salt bridges: C:K.225, C:K.225 pi-Stacking: C:H.369, C:H.369, C:H.369 pi-Cation interactions: C:H.282, C:H.369 Metal complexes: C:H.282 HEB.8: 15 residues within 4Å: Chain C: I.238, M.242, H.268, Q.269, G.272, Y.273, L.332, M.335, F.336, S.339, F.352, H.356, Y.359, V.362, F.384 16 PLIP interactions: 16 interactions with chain C, Hydrophobic interactions: C:I.238, C:I.238, C:M.242, C:L.332, C:F.336, C:F.352, C:F.352, C:Y.359, C:Y.359, C:V.362, C:F.384 Salt bridges: C:H.444 pi-Stacking: C:F.352, C:Y.359 pi-Cation interactions: C:H.356 Metal complexes: C:H.268

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.3: 14 residues within 4Å: Chain A: N.188, H.189, A.256, A.543, G.544, I.593, N.594, R.595, T.631, R.671, P.672, W.674, S.696, L.699 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.256, A:T.631, A:T.631, A:R.671, A:S.696 Salt bridges: A:R.595, A:R.595, A:R.595, A:R.671 pi-Cation interactions: A:R.671 NDP.9: 14 residues within 4Å: Chain C: N.188, H.189, A.256, A.543, G.544, I.593, N.594, R.595, T.631, R.671, P.672, W.674, S.696, L.699 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:A.256, C:T.631, C:T.631, C:R.671, C:S.696 Salt bridges: C:R.595, C:R.595, C:R.595, C:R.671 pi-Cation interactions: C:R.671

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 17 residues within 4Å: Chain A: D.262, Q.266, R.344, Y.430, W.443, H.444, P.445, F.446, T.447, H.461, I.462, R.463, Q.465, G.466, Q.467, W.468, T.469 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.430, A:P.445 Hydrogen bonds: A:Q.266, A:R.344, A:W.443, A:P.445, A:T.447, A:T.447, A:H.461, A:R.463, A:Q.467, A:W.468, A:T.469, A:T.469 Salt bridges: A:R.344, A:H.444 pi-Stacking: A:F.446 FAD.10: 17 residues within 4Å: Chain C: D.262, Q.266, R.344, Y.430, W.443, H.444, P.445, F.446, T.447, H.461, I.462, R.463, Q.465, G.466, Q.467, W.468, T.469 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:Y.430, C:P.445 Hydrogen bonds: C:Q.266, C:R.344, C:W.443, C:P.445, C:T.447, C:T.447, C:H.461, C:R.463, C:Q.467, C:W.468, C:T.469, C:T.469 Salt bridges: C:R.344, C:H.444 pi-Stacking: C:F.446

2 x PX2: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PX2.5: 9 residues within 4Å: Chain A: Q.192, C.195, L.196, H.203, L.241, P.260, Q.263, Q.266, F.267 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.196, A:L.196, A:H.203, A:L.241, A:P.260, A:Q.263, A:F.267, A:F.267 Hydrogen bonds: A:Q.192, A:Q.263 PX2.11: 9 residues within 4Å: Chain C: Q.192, C.195, L.196, H.203, L.241, P.260, Q.263, Q.266, F.267 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:L.196, C:L.196, C:H.203, C:L.241, C:P.260, C:Q.263, C:F.267, C:F.267 Hydrogen bonds: C:Q.192, C:Q.263

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: C.568, C.571 Chain C: C.568, C.571 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:C.568, C:C.571, A:C.568, A:C.571

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, C. et al., Structural basis of human NOX5 activation. Nat Commun (2024)

Release Date

2024-05-01

Peptides

NADPH oxidase 5: AC
ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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NADPH oxidase 5

ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA

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