- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 3 residues within 4Å:- Chain A: A.59, Q.62, R.67
Ligand excluded by PLIPCL.3: 2 residues within 4Å:- Chain A: F.117
- Ligands: CL.13
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: A.59, Q.62, R.67
Ligand excluded by PLIPCL.13: 2 residues within 4Å:- Chain B: F.117
- Ligands: CL.3
Ligand excluded by PLIPCL.22: 3 residues within 4Å:- Chain C: A.59, Q.62, R.67
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain C: F.117
- Ligands: CL.33
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain D: A.59, Q.62, R.67
Ligand excluded by PLIPCL.33: 2 residues within 4Å:- Chain D: F.117
- Ligands: CL.23
Ligand excluded by PLIP- 8 x IOD: IODIDE ION(Non-functional Binders)
IOD.4: 1 residues within 4Å:- Chain A: R.37
Ligand excluded by PLIPIOD.5: 8 residues within 4Å:- Chain A: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173
- Ligands: PYR.6
Ligand excluded by PLIPIOD.14: 1 residues within 4Å:- Chain B: R.37
Ligand excluded by PLIPIOD.15: 8 residues within 4Å:- Chain B: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173
- Ligands: PYR.16
Ligand excluded by PLIPIOD.24: 1 residues within 4Å:- Chain C: R.37
Ligand excluded by PLIPIOD.25: 8 residues within 4Å:- Chain C: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173
- Ligands: PYR.26
Ligand excluded by PLIPIOD.34: 1 residues within 4Å:- Chain D: R.37
Ligand excluded by PLIPIOD.35: 8 residues within 4Å:- Chain D: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173
- Ligands: PYR.36
Ligand excluded by PLIP- 4 x PYR: PYRUVIC ACID(Covalent)
PYR.6: 9 residues within 4Å:- Chain A: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173, I.214
- Ligands: IOD.5
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.19, A:K.173, A:I.214
- Hydrogen bonds: A:S.55, A:T.56
- Salt bridges: A:K.173
PYR.16: 9 residues within 4Å:- Chain B: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173, I.214
- Ligands: IOD.15
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.19, B:K.173, B:I.214
- Hydrogen bonds: B:S.55, B:T.56
- Salt bridges: B:K.173
PYR.26: 9 residues within 4Å:- Chain C: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173, I.214
- Ligands: IOD.25
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:A.19, C:K.173, C:I.214
- Hydrogen bonds: C:S.55, C:T.56, C:T.56, C:Y.145
- Salt bridges: C:K.173
PYR.36: 9 residues within 4Å:- Chain D: A.19, Y.51, G.54, S.55, T.56, Y.145, K.173, I.214
- Ligands: IOD.35
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:A.19, D:K.173, D:I.214
- Hydrogen bonds: D:S.55, D:T.56, D:T.56, D:Y.145
- Salt bridges: D:K.173
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: D.178, Y.180
- Chain C: G.177, Y.198, E.200
Ligand excluded by PLIPGOL.8: 6 residues within 4Å:- Chain A: F.121, S.122, F.123, H.126, K.154, Q.159
Ligand excluded by PLIPGOL.9: 6 residues within 4Å:- Chain A: R.32, R.36, E.69, E.72, I.73, E.76
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain A: L.206, G.209, A.210, L.232
- Chain C: T.237, Q.241
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain B: D.178, Y.180
- Chain D: G.177, Y.198, E.200
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain B: F.121, S.122, F.123, H.126, K.154, Q.159
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain B: R.32, R.36, E.69, E.72, I.73, E.76
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain B: L.206, G.209, A.210, L.232
- Chain D: T.237, Q.241
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain A: G.177, Y.198, E.200
- Chain C: D.178, Y.180
Ligand excluded by PLIPGOL.28: 6 residues within 4Å:- Chain C: F.121, S.122, F.123, H.126, K.154, Q.159
Ligand excluded by PLIPGOL.29: 6 residues within 4Å:- Chain C: R.32, R.36, E.69, E.72, I.73, E.76
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain A: T.237, Q.241
- Chain C: L.206, G.209, A.210, L.232
Ligand excluded by PLIPGOL.37: 5 residues within 4Å:- Chain B: G.177, Y.198, E.200
- Chain D: D.178, Y.180
Ligand excluded by PLIPGOL.38: 6 residues within 4Å:- Chain D: F.121, S.122, F.123, H.126, K.154, Q.159
Ligand excluded by PLIPGOL.39: 6 residues within 4Å:- Chain D: R.32, R.36, E.69, E.72, I.73, E.76
Ligand excluded by PLIPGOL.40: 6 residues within 4Å:- Chain B: T.237, Q.241
- Chain D: L.206, G.209, A.210, L.232
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovell, S. et al., Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate and halides bound). To be published
- Release Date
- 2023-09-27
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x IOD: IODIDE ION(Non-functional Binders)
- 4 x PYR: PYRUVIC ACID(Covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovell, S. et al., Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate and halides bound). To be published
- Release Date
- 2023-09-27
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A