- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: H.12, D.48, T.83
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.12, A:T.83, A:T.83
NA.10: 3 residues within 4Å:- Chain B: H.12, D.48, T.83
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.48, B:T.83
- Water bridges: B:T.83
NA.17: 3 residues within 4Å:- Chain C: H.12, D.48, T.83
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.83, C:T.83
NA.28: 3 residues within 4Å:- Chain D: H.12, D.48, T.83
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.12, D:T.83, D:T.83
- 16 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 1 residues within 4Å:- Chain A: F.121
Ligand excluded by PLIPCL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.11: 1 residues within 4Å:- Chain B: F.121
Ligand excluded by PLIPCL.12: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.13: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.19: 1 residues within 4Å:- Chain C: F.121
Ligand excluded by PLIPCL.20: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.21: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.29: 1 residues within 4Å:- Chain D: F.121
Ligand excluded by PLIPCL.30: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.31: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.32: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.33: 1 residues within 4Å:- Chain D: M.270
Ligand excluded by PLIP- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 8 residues within 4Å:- Chain A: S.55, I.147, L.150, K.173, T.175, G.197, Y.198
- Ligands: MPD.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.56, A:T.56, A:G.197
- Water bridges: A:T.175
GOL.14: 5 residues within 4Å:- Chain B: S.55, I.147, T.175, G.197
- Ligands: MPD.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.197
- Water bridges: B:Y.145, B:Y.145
GOL.23: 6 residues within 4Å:- Chain C: T.56, I.147, T.175, G.197, Y.198
- Ligands: MPD.16
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.197
- Water bridges: C:Y.145, C:Y.145
GOL.24: 5 residues within 4Å:- Chain C: R.36, E.69, E.72, I.73, E.76
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.36, C:E.69, C:E.72
GOL.25: 3 residues within 4Å:- Chain C: E.72, R.105, Y.106
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.105, C:R.105
- Water bridges: C:E.72, C:Y.106
GOL.34: 5 residues within 4Å:- Chain D: I.147, L.150, T.175, Y.198
- Ligands: MPD.27
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.198, D:Y.198
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovell, S. et al., Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound, Orthorhombic P form). To be published
- Release Date
- 2023-09-27
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 16 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovell, S. et al., Crystal structure of N-acetylneuraminate lyase (NanA) from Klebsiella aerogenes (pyruvate bound, Orthorhombic P form). To be published
- Release Date
- 2023-09-27
- Peptides
- N-acetylneuraminate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D