SMTL ID : 8u96.1

Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (ATP bound)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 11 residues within 4Å: Chain A: G.18, I.19, G.20, S.21, G.22, K.23, S.24, T.25, R.148, R.152, N.183 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.20, A:S.21, A:G.22, A:K.23, A:S.24, A:T.25, A:T.25, A:N.183, A:N.183 Water bridges: A:S.24, A:R.148, A:R.152 Salt bridges: A:K.23, A:K.23, A:R.152, A:R.152, A:R.152 pi-Cation interactions: A:R.148

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: A.44, R.45, V.48, R.75, L.78, R.79 Ligands: CL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.44, A:R.75, A:R.75, A:R.75

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain A: L.56, A.59, P.64, I.67 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.56, A:P.64, A:I.67

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.75, R.79 Ligands: PEG.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (ATP bound). To be published

Release Date

2023-09-27

Peptides

Dephospho-CoA kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dephospho-CoA kinase

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