SMTL ID : 8ugm.1

FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Z27 bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x WKK: 1-benzothiophen-3-ylboronic acid(Covalent)(Non-covalent)

WKK.1: 16 residues within 4Å: Chain A: A.31, S.106, S.107, P.132, N.147 Chain B: F.166, L.170, I.172, M.180, W.200, I.205, T.209, F.237, P.238, H.260 Ligands: WKK.6 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.170, B:W.200, B:I.205, B:T.209, A:P.132, A:P.132 Water bridges: A:A.31, A:S.107 WKK.2: 12 residues within 4Å: Chain A: M.163, F.166, G.167, L.170, I.172, M.180, S.181, R.196, T.197, W.200 Chain B: A.31 Ligands: WKK.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.166, A:I.172 Hydrogen bonds: A:M.180 Water bridges: A:R.196 WKK.6: 12 residues within 4Å: Chain A: A.31 Chain B: M.163, F.166, G.167, L.170, I.172, M.180, S.181, R.196, T.197, W.200 Ligands: WKK.1 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.170, B:I.172 Hydrogen bonds: B:M.180, B:M.180 Water bridges: B:R.196 WKK.7: 16 residues within 4Å: Chain A: F.166, L.170, I.172, M.180, W.200, I.205, T.209, F.237, P.238, H.260 Chain B: A.31, S.106, S.107, P.132, N.147 Ligands: WKK.2 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:P.132, B:P.132, A:L.170, A:W.200, A:I.205, A:T.209 Water bridges: B:A.31, B:S.107

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: Q.18, V.19 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.18, H2O.8 CA.4: 3 residues within 4Å: Chain A: K.82, Q.86, Y.119 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.119, H2O.4, H2O.4 CA.5: 3 residues within 4Å: Chain A: K.117, P.120 Chain B: Y.221 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:K.117, H2O.8, H2O.8, H2O.9, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M., FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Z27 bound. To Be Published

Release Date

2024-10-16

Peptides

Fluorophosphonate-binding serine hydrolase E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fluorophosphonate-binding serine hydrolase E

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