SMTL ID : 8urc.1

Bacillus niacini flavin monooxygenase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: V.36, G.37, A.38, G.39, P.40, A.41, L.59, E.60, Q.61, N.62, Y.69, R.70, G.71, E.72, I.73, Q.131, T.154, K.155, V.156, V.201, D.202, G.203, R.204, T.207, L.310, D.331, A.341, G.343, S.344, A.347 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.310 Hydrogen bonds: A:A.38, A:A.41, A:Q.61, A:Q.61, A:N.62, A:N.62, A:R.70, A:E.72, A:I.73, A:I.73, A:Q.131, A:K.155, A:V.156, A:R.204, A:T.207, A:D.331, A:D.331, A:G.343, A:S.344 FAD.3: 30 residues within 4Å: Chain B: V.36, G.37, A.38, G.39, P.40, A.41, L.59, E.60, Q.61, N.62, Y.69, R.70, G.71, E.72, I.73, Q.131, T.154, K.155, V.156, V.201, D.202, G.203, R.204, T.207, L.310, D.331, A.341, G.343, S.344, A.347 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:Y.69, B:Y.69, B:L.310 Hydrogen bonds: B:A.38, B:G.39, B:A.41, B:Q.61, B:N.62, B:N.62, B:R.70, B:E.72, B:I.73, B:I.73, B:Q.131, B:Q.131, B:V.156, B:V.156, B:T.207, B:D.331, B:G.343, B:S.344 FAD.5: 30 residues within 4Å: Chain C: V.36, G.37, A.38, G.39, P.40, A.41, L.59, E.60, Q.61, N.62, Y.69, R.70, G.71, E.72, I.73, Q.131, T.154, V.156, V.201, D.202, G.203, R.204, T.207, L.310, G.330, D.331, A.341, G.343, S.344, A.347 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:L.310 Hydrogen bonds: C:A.38, C:A.41, C:E.60, C:Q.61, C:Q.61, C:N.62, C:N.62, C:R.70, C:E.72, C:I.73, C:Q.131, C:V.156, C:D.202, C:T.207, C:D.331 Salt bridges: C:R.70

3 x DR9: 1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL(Non-covalent)

DR9.2: 28 residues within 4Å: Chain A: M.112, Y.241, F.243, F.245, T.392, I.393, K.395, F.396, L.397, K.403, I.406, A.407, M.410, F.411, A.414, M.417, D.419, I.420, L.423, L.427, F.428 Chain C: I.402, E.405, I.406, L.409, S.412, I.413, K.416 30 PLIP interactions: 23 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:F.243, A:F.243, A:F.245, A:T.392, A:I.393, A:I.393, A:K.395, A:F.396, A:F.396, A:F.396, A:F.396, A:L.397, A:K.403, A:I.406, A:I.406, A:A.407, A:F.411, A:F.411, A:A.414, A:L.423, A:L.427, A:F.428, C:I.402, C:E.405, C:I.406, C:I.413 Hydrogen bonds: A:D.419, C:S.412 Salt bridges: C:K.416, C:K.416 DR9.4: 22 residues within 4Å: Chain B: V.102, M.112, Y.241, F.243, F.245, T.392, I.393, F.396, I.406, M.410, F.411, A.414, M.417, D.419, I.420, L.423, L.427, F.428 Chain C: K.395, K.403, M.410 Ligands: DR9.6 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:V.102, B:F.243, B:F.243, B:F.245, B:I.393, B:I.393, B:F.396, B:F.396, B:F.396, B:I.406, B:F.411, B:A.414, B:L.423, B:L.427, B:F.428 Hydrogen bonds: B:D.419, C:K.403 Salt bridges: C:K.395, C:K.403 DR9.6: 28 residues within 4Å: Chain B: K.395, K.403, M.410, I.413, A.414 Chain C: V.102, M.112, Y.241, F.243, F.245, T.392, I.393, K.395, F.396, L.397, T.398, K.403, I.406, A.407, M.410, F.411, A.414, D.419, I.420, L.423, Y.424, L.427 Ligands: DR9.4 27 PLIP interactions: 21 interactions with chain C, 6 interactions with chain B Hydrophobic interactions: C:V.102, C:F.243, C:F.243, C:F.243, C:F.245, C:I.393, C:I.393, C:K.395, C:F.396, C:F.396, C:F.396, C:L.397, C:T.398, C:K.403, C:I.406, C:A.407, C:F.411, C:A.414, C:I.420, C:Y.424, C:L.427, B:I.413, B:A.414 Hydrogen bonds: B:K.403, B:K.403 Salt bridges: B:K.395, B:K.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richardson, B.C. et al., Structural and Functional Characterization of a Novel Class A Flavin Monooxygenase from Bacillus niacini. Biochemistry (2024)

Release Date

2024-09-18

Peptides

Flavin monooxygenase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Flavin monooxygenase

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