SMTL ID : 8ut2.1

Pre-fusion Measles virus fusion protein complexed with Fab 77

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: N.61, T.63, L.64 Chain B: E.43, T.44, N.46 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.44, B:T.44 NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: N.29, K.32 Chain B: G.249, S.250, T.251, R.333, I.334, D.335 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.335, B:D.335 NAG-NAG-BMA.3: 6 residues within 4Å: Chain C: N.61, T.63 Chain D: E.43, T.44, T.45, N.46 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:T.44 NAG-NAG-BMA.4: 9 residues within 4Å: Chain C: H.26, N.29, K.32 Chain D: R.248, G.249, T.251, R.333, I.334, D.335 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 5 residues within 4Å: Chain E: N.61, T.63 Chain F: E.43, T.44, N.46 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 9 residues within 4Å: Chain E: H.26, N.29, K.32 Chain F: G.249, S.250, T.251, R.333, I.334, D.335 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: T.63, N.66, N.67 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain C: N.67, R.70 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.70, C:R.70 NAG.9: 1 residues within 4Å: Chain E: N.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zyla, D.S. et al., A neutralizing antibody prevents postfusion transition of measles virus fusion protein. Science (2024)

Release Date

2024-07-03

Peptides

Fusion glycoprotein F0: ACE
Fusion glycoprotein F0: BDF
mAb 77 Light chain: GIK
mAb 77 Heavy Chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

K
K

H
H

J
J

L
L

Fusion glycoprotein F0

Fusion glycoprotein F0

mAb 77 Light chain

mAb 77 Heavy Chain

Related Entries With Identical Sequence