SMTL ID : 8uup.1

Structure of the Measles virus Fusion protein in the pre-fusion conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: H.26, N.29 Chain B: R.248, G.249, S.250, R.333, D.335 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.335, B:D.335

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: N.61, T.63 Chain B: E.43, T.44, T.45, N.46 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain C: N.61, T.63 Chain D: E.43, T.44, T.45, N.46 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain E: N.61, T.63 Chain F: E.43, T.44, N.46 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 7 residues within 4Å: Chain C: H.26, N.29 Chain D: R.248, G.249, S.250, T.251, D.335 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.335 NAG-NAG-BMA-MAN-MAN.5: 9 residues within 4Å: Chain B: E.366 Chain E: H.26, N.29, K.32 Chain F: G.249, T.251, K.252, R.333, D.335 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.252, F:D.335, F:D.335

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: N.66, N.67, R.70 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.66 Hydrogen bonds: A:R.70 NAG.8: 2 residues within 4Å: Chain E: N.66, N.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zyla, D.S. et al., A neutralizing antibody prevents postfusion transition of measles virus fusion protein. Science (2024)

Release Date

2024-07-03

Peptides

Fusion glycoprotein F0: ACE
Fusion glycoprotein F0: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Fusion glycoprotein F0

Fusion glycoprotein F0

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