SMTL ID : 8uvy.1

Structure of AKT1(E17K) with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL

EDO.1: 5 residues within 4Å: Chain A: F.228, S.232, E.333, G.337, R.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.232, A:E.333

1 x XOO: 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde

XOO.2: 19 residues within 4Å: Chain A: K.16, N.52, Q.78, W.79, I.83, L.202, T.203, L.256, V.262, V.263, Y.264, R.265, I.282, T.283, D.284, C.288, C.302 Ligands: SO4.3, ZN.9 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:K.16, A:Q.78, A:Q.78, A:W.79, A:I.83, A:L.202, A:V.262, A:Y.264, A:Y.264, A:I.282 Hydrogen bonds: A:T.203, A:T.203 Water bridges: A:D.284 pi-Stacking: A:W.79, A:W.79, A:Y.264

6 x SO4: SULFATE ION

SO4.3: 4 residues within 4Å: Chain A: K.13, R.265, D.315 Ligands: XOO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.315, A:Y.318 Salt bridges: A:K.13, A:K.16, A:R.265 SO4.4: 1 residues within 4Å: Chain A: Q.406 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.406 SO4.5: 2 residues within 4Å: Chain A: S.238, R.241 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.238, A:S.238, A:S.238 Water bridges: A:E.234, A:R.241 Salt bridges: A:R.241 SO4.6: 2 residues within 4Å: Chain A: W.10, R.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.10 Salt bridges: A:R.40 SO4.7: 4 residues within 4Å: Chain A: K.19, R.22, R.24, K.38 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.19, A:R.22, A:R.24, A:K.38 SO4.8: 1 residues within 4Å: Chain A: R.359 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.359

1 x ZN: ZINC ION

ZN.9: 5 residues within 4Å: Chain A: K.16, C.288, K.289, C.302 Ligands: XOO.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.288, A:C.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Craven, G.B. et al., Mutant-selective AKT1 inhibitors via lysine targeting and neo-zinc chelation. To Be Published

Release Date

2024-09-04

Peptides

RAC-alpha serine/threonine-protein kinase: A
NB41: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RAC-alpha serine/threonine-protein kinase

NB41

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