SMTL ID : 8uw7.1

Structure of AKT1(WT) with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL

EDO.1: 7 residues within 4Å: Chain A: F.228, L.231, S.232, E.333, G.337, R.338 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.232, A:E.333 EDO.3: 3 residues within 4Å: Chain A: F.237, S.238, R.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.238, A:S.238 Water bridges: A:V.236, A:R.241 EDO.4: 5 residues within 4Å: Chain A: E.333, R.338, L.339, Y.342 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.339 EDO.8: 4 residues within 4Å: Chain B: Y.94, W.106, G.107, P.108 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.94, B:Y.94, B:Y.94

1 x XOO: 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde

XOO.2: 20 residues within 4Å: Chain A: E.16, Y.17, N.52, Q.78, W.79, S.197, L.202, T.203, L.256, V.262, V.263, Y.264, R.265, D.266, I.282, T.283, D.284, L.287, C.288, K.289 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.17, A:N.52, A:Q.78, A:W.79, A:W.79, A:L.202, A:L.256, A:V.262, A:Y.264, A:I.282, A:K.289 Hydrogen bonds: A:S.197, A:T.203, A:T.203, A:K.289, A:K.289 Water bridges: A:D.284 pi-Stacking: A:W.79, A:Y.264

4 x SO4: SULFATE ION

SO4.5: 3 residues within 4Å: Chain A: R.338, P.361, R.362 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.362 Salt bridges: A:R.338 SO4.6: 4 residues within 4Å: Chain A: R.22, R.24, K.38, E.314 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.22, A:R.24, A:K.38 SO4.7: 2 residues within 4Å: Chain A: K.150, K.155 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.155, A:K.155 Salt bridges: A:K.150, A:K.155, A:R.214 SO4.9: 3 residues within 4Å: Chain B: G.109, T.110, Q.111 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Craven, G.B. et al., Mutant-selective AKT1 inhibitors via lysine targeting and neo-zinc chelation. To Be Published

Release Date

2024-09-04

Peptides

RAC-alpha serine/threonine-protein kinase: A
NB41: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RAC-alpha serine/threonine-protein kinase

NB41

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