SMTL ID : 8uy6.1

Aquaporin Z with ALFA tag and bound to nanobody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-8-mer

Ligands

8 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 29 residues within 4Å: Chain A: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 Chain G: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain G Hydrophobic interactions: A:F.10, A:F.13, A:F.13, A:F.13, A:I.93, A:V.94, A:A.97, A:L.101, A:I.195, A:L.205, A:W.209, A:V.210, G:V.140 CDL.2: 29 residues within 4Å: Chain A: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain C: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:F.10, C:F.13, C:F.13, C:F.13, C:I.93, C:V.94, C:A.97, C:L.101, C:I.195, C:L.205, C:W.209, C:V.210, A:V.140 CDL.3: 29 residues within 4Å: Chain C: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain E: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:F.10, E:F.13, E:F.13, E:F.13, E:I.93, E:V.94, E:A.97, E:L.101, E:I.195, E:L.205, E:W.209, E:V.210, C:V.140 CDL.4: 29 residues within 4Å: Chain E: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain G: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: G:F.10, G:F.13, G:F.13, G:F.13, G:I.93, G:V.94, G:A.97, G:L.101, G:I.195, G:L.205, G:W.209, G:V.210, E:V.140 CDL.5: 29 residues within 4Å: Chain I: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 Chain O: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 13 PLIP interactions: 1 interactions with chain O, 12 interactions with chain I Hydrophobic interactions: O:V.140, I:F.10, I:F.13, I:F.13, I:F.13, I:I.93, I:V.94, I:A.97, I:L.101, I:I.195, I:L.205, I:W.209, I:V.210 CDL.6: 29 residues within 4Å: Chain I: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain K: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain K, 1 interactions with chain I Hydrophobic interactions: K:F.10, K:F.13, K:F.13, K:F.13, K:I.93, K:V.94, K:A.97, K:L.101, K:I.195, K:L.205, K:W.209, K:V.210, I:V.140 CDL.7: 29 residues within 4Å: Chain K: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain M: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain M, 1 interactions with chain K Hydrophobic interactions: M:F.10, M:F.13, M:F.13, M:F.13, M:I.93, M:V.94, M:A.97, M:L.101, M:I.195, M:L.205, M:W.209, M:V.210, K:V.140 CDL.8: 29 residues within 4Å: Chain M: L.132, V.136, L.139, V.140, A.143, G.144, L.147, I.218, I.222 Chain O: C.9, F.10, F.13, W.14, I.86, V.90, G.91, I.93, V.94, A.97, L.98, Y.100, L.101, T.191, I.195, F.196, L.205, W.206, W.209, V.210 13 PLIP interactions: 12 interactions with chain O, 1 interactions with chain M Hydrophobic interactions: O:F.10, O:F.13, O:F.13, O:F.13, O:I.93, O:V.94, O:A.97, O:L.101, O:I.195, O:L.205, O:W.209, O:V.210, M:V.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stover, L. et al., Grafting the ALFA tag for structural studies of aquaporin Z. J Struct Biol X (2024)

Release Date

2024-09-25

Peptides

Aquaporin Z: ACEGIKMO
anti-ALFA nanobody: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

M
M

O
O

B
B

D
D

F
F

H
H

J
J

L
L

N
N

P
P

Membrane

We predict this structure to be a membrane protein.
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Aquaporin Z

anti-ALFA nanobody

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