SMTL ID : 8uyn.3 (2 other biounits)

Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PIN: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)

PIN.1: 4 residues within 4Å: Chain A: N.25, Q.28, N.116, R.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.25, A:Q.28 Water bridges: A:R.140 Salt bridges: A:R.140

1 x LA: LANTHANUM (III) ION

LA.2: 1 residues within 4Å: Ligands: 4OL.3 No protein-ligand interaction detected (PLIP)

1 x 4OL: N,N'-butane-1,4-diylbis[1-hydroxy-N-(3-{[(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)carbonyl]amino}propyl)-6-oxo-1,6-dihydropyridine-2-carboxamide]

4OL.3: 16 residues within 4Å: Chain A: A.40, I.41, Y.52, S.68, L.70, R.72, W.79, R.81, Y.100, Y.106, F.123, K.125, Y.132, F.133, K.134 Ligands: LA.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.40, A:I.41, A:Y.52, A:W.79, A:Y.100, A:Y.106, A:F.123, A:K.125, A:Y.132, A:K.134 Hydrogen bonds: A:Y.106, A:K.125, A:K.134 Water bridges: A:Y.52, A:R.81, A:R.81, A:K.134 pi-Stacking: A:W.79, A:Y.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wacker, J.N. et al., Actinium chelation and crystallization in a macromolecular scaffold. Nat Commun (2024)

Release Date

2024-09-25

Peptides

Neutrophil gelatinase-associated lipocalin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Neutrophil gelatinase-associated lipocalin

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