SMTL ID : 8uzf.1 (1 other biounit)

Crystal structure of chimeric RaTG13 RBD complexed with chimeric mouse ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.402, S.527, N.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.402

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.356, H.360, E.384 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.356, A:H.360, A:E.384, A:E.384, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: R.151, W.253, W.459, K.463 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: F.372, L.373, R.375 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: N.35, T.37, E.39, N.40, R.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.39, A:N.40, A:N.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Crystal structure of chimeric RaTG13 RBD complexed with chimeric mouse ACE2. To Be Published

Release Date

2024-07-24

Peptides

Angiotensin-converting enzyme 2: A
Receptor binding domain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Receptor binding domain

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