SMTL ID : 8uzf.2 (1 other biounit)

Crystal structure of chimeric RaTG13 RBD complexed with chimeric mouse ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.35, T.37, E.39, N.40, R.322 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 1 residues within 4Å: Chain A: N.528 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.356, H.360, E.384 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384, A:E.384

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.151, W.459, K.463, D.481 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: E.132, E.142 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: G.301, Q.534, F.537 No protein-ligand interaction detected (PLIP) EDO.7: 8 residues within 4Å: Chain A: A.135, N.136, S.137, L.138, R.143, N.259, S.262, L.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.143, A:Y.234, A:S.262, A:S.262

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 5 residues within 4Å: Chain A: Q.63, Q.83, Q.84, N.85, H.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.63, A:Q.63 NAG.9: 4 residues within 4Å: Chain B: F.20, G.21, F.24, N.25 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.20, B:F.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Crystal structure of chimeric RaTG13 RBD complexed with chimeric mouse ACE2. To Be Published

Release Date

2024-07-24

Peptides

Angiotensin-converting enzyme 2: A
Receptor binding domain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Angiotensin-converting enzyme 2

Receptor binding domain

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