SMTL ID : 8v29.1

Cryo-EM structure of human type I OSM receptor complex: model for full extracellular assembly

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.75, R.122 Chain B: T.144 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain B: N.21, T.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.70, B:T.70 NAG-NAG.3: 5 residues within 4Å: Chain C: S.330, N.363, T.365, Q.376, T.378 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.376 NAG-NAG.4: 3 residues within 4Å: Chain C: N.382, T.384, E.385 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain C: I.171, N.199, S.201 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain B: N.109 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: T.319, T.324, N.368 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: H.204, N.205 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain B: I.341, L.342, N.361 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain B: N.357 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.357 NAG.11: 4 residues within 4Å: Chain B: V.27, N.61, T.63, A.64 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.63 NAG.12: 1 residues within 4Å: Chain C: N.259 No protein-ligand interaction detected (PLIP) NAG.13: 2 residues within 4Å: Chain C: E.444, N.445 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.445, C:N.445 NAG.14: 4 residues within 4Å: Chain C: N.401, T.403, A.404, D.453 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.401, C:T.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structures of complete extracellular assemblies of type I and type II Oncostatin M receptor complexes. Nat Commun (2024)

Release Date

2024-11-20

Peptides

Oncostatin-M: A
Interleukin-6 receptor subunit beta: B
Leukemia inhibitory factor receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Oncostatin-M

Interleukin-6 receptor subunit beta

Leukemia inhibitory factor receptor

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