SMTL ID : 8v2f.3 (3 other biounits)

Crystal structure of IRAK4 kinase domain with compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x YJU: N-{2-[(1r,4r)-4-(hydroxymethyl)cyclohexyl]-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl}-6-(trifluoromethyl)pyridine-2-carboxamide(Non-covalent)

YJU.1: 14 residues within 4Å: Chain A: M.59, V.67, A.78, K.80, V.113, Y.129, V.130, Y.131, M.132, P.133, G.135, R.140, D.145, L.185 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.59, A:V.67, A:A.78, A:V.113, A:Y.129, A:Y.129, A:Y.131, A:L.185 Hydrogen bonds: A:M.132 Water bridges: A:S.136

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: D.255, H.257, R.258 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: W.152, H.153, C.156, D.289, S.292, T.325 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.153, A:D.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weiss, M.M. et al., Discovery of KT-413, a Targeted Protein Degrader of IRAK4 and IMiD Substrates Targeting MYD88 Mutant Diffuse Large B-Cell Lymphoma. J.Med.Chem. (2024)

Release Date

2024-07-03

Peptides

Interleukin-1 receptor-associated kinase 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Interleukin-1 receptor-associated kinase 4

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