SMTL ID : 8v2l.1 (3 other biounits)

Crystal structure of IRAK4 kinase domain with compound 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x YK0: N-{2-[4-(hydroxymethyl)phenyl]-6-(2-hydroxypropan-2-yl)-2H-indazol-5-yl}-6-(trifluoromethyl)pyridine-2-carboxamide(Non-covalent)

YK0.1: 17 residues within 4Å: Chain A: I.52, M.59, G.60, V.67, A.78, K.80, V.113, Y.129, V.130, Y.131, M.132, P.133, G.135, D.139, R.140, T.147, L.185 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:M.59, A:V.67, A:A.78, A:V.113, A:V.113, A:Y.129, A:Y.129, A:Y.131, A:T.147, A:L.185, A:L.185 Hydrogen bonds: A:M.132 Water bridges: A:E.61, A:D.139

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.108, H.109, E.114, K.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.109, A:E.114, A:K.193, A:K.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weiss, M.M. et al., Discovery of KT-413, a Targeted Protein Degrader of IRAK4 and IMiD Substrates Targeting MYD88 Mutant Diffuse Large B-Cell Lymphoma. J.Med.Chem. (2024)

Release Date

2024-07-03

Peptides

Interleukin-1 receptor-associated kinase 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-1 receptor-associated kinase 4

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