- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x F0G: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine(Non-covalent)
F0G.2: 18 residues within 4Å:- Chain A: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, R.414
- Chain B: Y.72
24 PLIP interactions:23 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.132, A:F.132, A:T.190
- Hydrogen bonds: A:T.50, A:S.52, A:Q.99, A:G.100, A:R.101, A:T.135, A:N.194, A:R.226, A:R.226, A:S.263, A:K.266
- Water bridges: A:A.225, A:K.265, B:Y.72
- Salt bridges: A:R.101, A:R.226, A:K.265, A:K.266, A:K.266, A:R.414
- pi-Stacking: A:F.132
F0G.10: 18 residues within 4Å:- Chain C: Y.72
- Chain D: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, R.414
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:F.132, D:F.132, D:T.190
- Hydrogen bonds: D:T.50, D:S.52, D:S.52, D:Q.99, D:G.100, D:R.101, D:T.135, D:N.194, D:R.226, D:R.226, D:S.263, D:S.263, D:K.266
- Water bridges: D:A.225, D:K.265
- Salt bridges: D:R.101, D:R.226, D:K.265, D:K.266, D:K.266, D:R.414
- pi-Stacking: D:F.132
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 3 residues within 4Å:- Chain B: K.333, D.337, Y.348
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.348
- Salt bridges: B:D.337
DMS.8: 3 residues within 4Å:- Chain C: K.333, D.337, Y.348
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.333
- Water bridges: C:R.340
- Salt bridges: C:D.337
- 2 x PLI: (2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}PROPANOIC ACID
PLI.5: 18 residues within 4Å:- Chain A: Y.72
- Chain B: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, R.414
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:F.132, B:F.132, B:F.132, B:T.190
- Hydrogen bonds: B:T.50, B:S.52, B:Q.99, B:G.100, B:R.101, B:N.194, B:D.223, B:R.226, B:R.226, B:S.263, B:K.266
- Water bridges: B:A.225, B:K.265, B:K.265
- Salt bridges: B:R.101, B:R.226, B:K.265, B:K.266, B:K.266, B:R.414
PLI.9: 17 residues within 4Å:- Chain C: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, R.414
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:F.132, C:F.132, C:F.132, C:T.190
- Hydrogen bonds: C:S.52, C:Q.99, C:G.100, C:R.101, C:N.194, C:N.194, C:D.223, C:R.226, C:R.226, C:S.263, C:K.266
- Water bridges: C:S.52, C:A.225, C:K.265
- Salt bridges: C:R.101, C:R.226, C:K.265, C:K.266, C:R.414
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S., Proteus vulgaris tryptophan indole-lyase complexed with L-alanine. To Be Published
- Release Date
- 2023-12-06
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x F0G: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine(Non-covalent)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x PLI: (2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}PROPANOIC ACID
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S., Proteus vulgaris tryptophan indole-lyase complexed with L-alanine. To Be Published
- Release Date
- 2023-12-06
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D