SMTL ID : 8vau.1

Nicotinamide Riboside and CD38: Covalent Inhibition and Live-Cell Labeling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NNR: Nicotinamide riboside(Non-covalent)

NNR.1: 9 residues within 4Å: Chain A: K.86, E.103, D.112, D.113, L.114, V.142, W.146, T.178 Ligands: RIB.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.86, A:E.103, A:D.112, A:D.112, A:D.113, A:D.113, A:L.114 Water bridges: A:L.114, A:L.114 pi-Stacking: A:W.146, A:W.146 NNR.3: 8 residues within 4Å: Chain B: K.86, E.103, D.112, D.113, L.114, V.142, W.146 Ligands: RIB.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.86, B:D.112, B:D.113, B:L.114 Water bridges: B:L.114 pi-Stacking: B:W.146, B:W.146

2 x RIB: alpha-D-ribofuranose(Post Translational Modification)

RIB.2: 11 residues within 4Å: Chain A: L.80, L.81, W.82, T.101, L.102, E.103, S.150, F.153, T.178, E.183 Ligands: NNR.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.80, A:W.82, A:L.102, A:E.103 RIB.4: 11 residues within 4Å: Chain B: L.80, L.81, W.82, T.101, L.102, E.103, S.150, F.153, T.178, E.183 Ligands: NNR.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.80, B:W.82, B:L.102, B:E.103, B:S.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kao, G. et al., Nicotinamide Riboside and CD38: Covalent Inhibition and Live-Cell Labeling. Jacs Au (2024)

Release Date

2024-11-06

Peptides

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1

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