SMTL ID : 8vjy.1 (1 other biounit)

Structure of Human Neurolysin in complex with Neurotensin peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.460, H.464, E.489, S.492 Chain B: R.10, P.11 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.460, A:H.464, A:E.489, A:E.489, B:R.10

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: W.13, D.14, L.15, P.72, V.81, W.377 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.15, A:L.15 EDO.3: 5 residues within 4Å: Chain A: T.67, D.70, F.71, G.416 Chain B: P.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.70, A:G.416 Water bridges: A:Q.73 EDO.4: 5 residues within 4Å: Chain A: F.342, Y.346, H.511, D.514, S.516 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.514, A:S.516 EDO.5: 5 residues within 4Å: Chain A: L.169, L.206, K.207, R.234, N.410 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.169, A:L.206, A:K.207, A:R.234, A:N.410 EDO.6: 2 residues within 4Å: Chain A: G.426, R.428 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.428 Water bridges: A:S.2, A:S.2 EDO.7: 3 residues within 4Å: Chain A: K.61, L.423, M.429 No protein-ligand interaction detected (PLIP) EDO.8: 2 residues within 4Å: Chain A: S.561, A.564 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.561 Water bridges: A:A.564 EDO.9: 5 residues within 4Å: Chain A: T.31, Y.35, Y.62, F.95, D.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.35, A:D.96, A:D.96 Water bridges: A:E.59, A:E.59 EDO.10: 2 residues within 4Å: Chain A: E.294, R.297 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.297 Water bridges: A:E.294 EDO.11: 6 residues within 4Å: Chain A: W.13, S.76, S.77, V.81, W.377 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.77, A:W.377 Water bridges: A:L.15 EDO.12: 2 residues within 4Å: Chain A: G.7, L.423 No protein-ligand interaction detected (PLIP) EDO.13: 1 residues within 4Å: Chain A: R.477 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.477, A:R.477

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of divergent substrate recognition and inhibition of human neurolysin. Sci Rep (2024)

Release Date

2024-08-21

Peptides

Neurolysin, mitochondrial: A
Neurotensin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neurolysin, mitochondrial

Neurotensin

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