SMTL ID : 8vjy.2 (1 other biounit)

Structure of Human Neurolysin in complex with Neurotensin peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.460, H.464, E.489, S.492 Chain B: R.10, P.11 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 interactions with chain B Metal complexes: A:H.460, A:H.464, A:E.489, H2O.3, B:R.10

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: W.13, D.14, L.15, P.72, S.76, V.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.15, A:L.15 EDO.3: 5 residues within 4Å: Chain A: Y.35, Y.62, F.95, D.96, M.99 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: Y.346, H.511, D.514, S.516 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.514, A:S.516 Water bridges: A:E.345, A:Y.346, A:H.511 EDO.5: 3 residues within 4Å: Chain A: E.333, S.337, D.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.333 EDO.6: 7 residues within 4Å: Chain A: T.240, L.243, Q.244, L.247, L.557, D.558, A.559 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.559 Water bridges: A:Q.244, A:D.558, A:A.560 EDO.7: 3 residues within 4Å: Chain A: Q.472, K.634, P.635 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.472, A:K.634 Water bridges: A:N.630 EDO.8: 5 residues within 4Å: Chain A: W.601, F.605, P.653, N.654, Q.655 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.277 EDO.9: 7 residues within 4Å: Chain A: L.537, T.538, Q.541, L.600, E.603, R.662 Chain B: Y.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.538, A:R.662, A:R.662 EDO.10: 2 residues within 4Å: Chain A: E.294, R.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.297 Water bridges: A:E.294, A:E.294 EDO.11: 7 residues within 4Å: Chain A: A.321, R.540, Y.563, C.567, L.571, V.573, A.574 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.540, A:R.540 Water bridges: A:E.228, A:Y.563, A:T.576

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of divergent substrate recognition and inhibition of human neurolysin. Sci Rep (2024)

Release Date

2024-08-21

Peptides

Neurolysin, mitochondrial: A
Neurotensin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Neurolysin, mitochondrial

Neurotensin

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