SMTL ID : 8vpq.1

The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4IPR310delinsTTYML

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: D.176, I.177, H.178, D.264 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.176, C:D.176, C:H.178

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 11 residues within 4Å: Chain B: W.326, W.328 Chain C: Y.23, Q.26, G.27, K.31, R.270, I.305 Chain D: K.212, Y.234, K.237 12 PLIP interactions: 6 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:G.27, C:H.28, C:R.270, D:Y.234 Salt bridges: C:K.31, C:K.31, C:R.270, D:K.212, D:K.212, D:K.237, D:K.237, D:K.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, X. et al., Molecular Mechanism Underlying KBTBD4 Cancer Mutation-Driven Degradation of HDAC Corepressor Complexes. To Be Published

Release Date

2024-11-27

Peptides

Isoform 2 of Kelch repeat and BTB domain-containing protein 4: AB
Histone deacetylase 1: C
REST corepressor 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Isoform 2 of Kelch repeat and BTB domain-containing protein 4

Histone deacetylase 1

REST corepressor 1

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