SMTL ID : 8vq2.1 (1 other biounit)

HSV1 polymerase ternary complex with dsDNA and compound 44

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.83 Å

Oligo State

monomer

Ligands

1 x 01: 2-(4-bromophenyl)-N-(3-methoxy-4-{[(4S)-2-oxo-1,3-oxazolidin-4-yl]methyl}phenyl)acetamide

01.1: 15 residues within 4Å: Chain A: Q.583, Q.584, S.686, L.687, Y.688, P.689, S.782, Y.784, G.785, F.786, T.853, D.854 Chain B: G.2, G.3 Chain C: C.13 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.784 Hydrogen bonds: A:Y.688 pi-Stacking: A:Y.688

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plotkin, M.A. et al., Discovery of Broad-Spectrum Herpes Antiviral Oxazolidinone Amide Derivatives and Their Structure-Activity Relationships. Acs Med.Chem.Lett. (2024)

Release Date

2024-08-28

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase

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