SMTL ID : 8vqk.1 (1 other biounit)

YcjN from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.235, D.411, L.412, S.413 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.411, A:L.412, A:S.413 Salt bridges: A:R.235

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: V.397, S.400, M.401, N.404, T.415, A.418, S.419, K.422 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.400 Water bridges: A:N.404, A:N.404, A:K.422, A:K.422

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: S.36, Y.72, E.90, T.91, S.92, Y.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.36, A:S.92

2 x K: POTASSIUM ION(Non-covalent)

K.4: 2 residues within 4Å: Chain A: E.32, E.87 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.32, A:E.87, A:E.87 K.5: 1 residues within 4Å: Chain A: D.106 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.106, A:D.106, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trevino, M.A. et al., Expression, purification, and characterization of diacylated Lipo-YcjN from Escherichia coli. J.Biol.Chem. (2024)

Release Date

2024-10-09

Peptides

Putative ABC transporter periplasmic-binding protein YcjN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative ABC transporter periplasmic-binding protein YcjN

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