SMTL ID : 8vqk.2 (1 other biounit)

YcjN from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.235, D.411, L.412, S.413 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.411, A:L.412, A:S.413 Salt bridges: A:R.235

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 1 residues within 4Å: Chain A: E.316 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.316, A:E.316, H2O.5, H2O.6 CD.3: 1 residues within 4Å: Chain A: H.403 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.403, H2O.3, H2O.5

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 7 residues within 4Å: Chain A: S.36, E.69, Y.72, E.90, T.91, S.92, Y.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.36, A:S.36, A:T.91, A:S.92 Water bridges: A:Y.72 PEG.5: 5 residues within 4Å: Chain A: S.400, N.404, A.418, S.419, K.422 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.404, A:K.422

2 x K: POTASSIUM ION(Non-covalent)

K.6: 1 residues within 4Å: Chain A: E.313 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.313, A:E.313 K.7: 1 residues within 4Å: Chain A: E.87 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.87, A:E.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trevino, M.A. et al., Expression, purification, and characterization of diacylated Lipo-YcjN from Escherichia coli. J.Biol.Chem. (2024)

Release Date

2024-10-09

Peptides

Putative ABC transporter periplasmic-binding protein YcjN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative ABC transporter periplasmic-binding protein YcjN

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