SMTL ID : 8vsj.1

Engineered peptide-specific binder in complex with HLA-DR1/CLIP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 4 residues within 4Å: Chain A: V.116, N.118, E.166, W.168 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.166 Hydrogen bonds: A:W.168 NAG.2: 3 residues within 4Å: Chain A: R.76, N.78 Chain E: S.67 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: N.19, E.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.19, B:E.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, H. et al., Differentiating MHC-II antigens with a single loop. To Be Published

Release Date

2024-10-02

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen DR beta chain: B
Superantigen: C
c44H10 Fab heavy chain: D
c44H10 Fab light chain: E
Class-II-associated invariant chain peptide: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
L

F
P

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen DR beta chain

Superantigen

c44H10 Fab heavy chain

c44H10 Fab light chain

Class-II-associated invariant chain peptide

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