SMTL ID : 8w1v.1

The beta2 adrenergic receptor bound to a bitopic ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 01: (2S)-1-[(3-{1-[4-(4-{(2S)-2-hydroxy-3-[(propan-2-yl)amino]propoxy}phenyl)butyl]-1H-1,2,3-triazol-4-yl}propyl)amino]-3-(2-propylphenoxy)propan-2-ol

01.1: 26 residues within 4Å: Chain A: H.117, W.133, T.134, D.137, V.138, V.141, T.142, C.215, D.216, F.217, F.218, T.219, A.224, S.227, S.228, S.231, W.310, F.313, F.314, N.317, H.320, K.329, Y.332, I.333, N.336, Y.340 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.133, A:V.138, A:V.138, A:V.141, A:T.142, A:D.216, A:A.224, A:F.314, A:N.317, A:K.329, A:Y.332, A:Y.332, A:I.333 Hydrogen bonds: A:D.137, A:D.137, A:F.217, A:T.219, A:T.219, A:T.219, A:N.336 pi-Stacking: A:F.314 01.2: 23 residues within 4Å: Chain B: W.133, T.134, D.137, V.138, V.141, T.142, C.215, D.216, F.217, F.218, T.219, A.224, S.227, W.310, F.313, F.314, N.317, H.320, K.329, Y.332, I.333, N.336, Y.340 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:W.133, B:V.138, B:V.141, B:T.142, B:D.216, B:A.224, B:K.329, B:Y.332, B:Y.332, B:I.333 Hydrogen bonds: B:D.137, B:T.219, B:T.219, B:N.336 pi-Stacking: B:F.314, B:Y.332

1 x AV0: Lauryl Maltose Neopentyl Glycol(Non-covalent)

AV0.3: 22 residues within 4Å: Chain A: T.188, H.196, W.197, R.199, A.200, T.201, A.222, Y.223, A.226, S.227, S.231 Chain B: T.188, P.192, H.196, W.197, R.199, T.201, A.222, Y.223, A.226, S.227, V.230 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.192, B:W.197, B:A.222, B:A.226, B:V.230, A:A.222, A:A.226 Hydrogen bonds: B:R.199, A:A.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaiser, B.I. et al., Bitopic Ligands Support the Presence of a Metastable Binding Site at the beta 2 Adrenergic Receptor. J.Med.Chem. (2024)

Release Date

2024-07-17

Peptides

Beta-2 adrenergic receptor,Endolysin: AB
Nanobody60: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
F

Membrane

We predict this structure to be a membrane protein.
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Beta-2 adrenergic receptor,Endolysin

Nanobody60

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