SMTL ID : 8w2p.1

BsaXI-DNA complex I

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 22 residues within 4Å: Chain A: K.357, G.358, Q.359, F.360, F.361, T.362, D.395, P.396, S.397, G.399, T.402, F.403, E.455, I.456, D.482, G.483, L.484, N.523, P.524, P.525, F.554 Chain D: A.22 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.361 Hydrogen bonds: A:K.357, A:G.358, A:Q.359, A:T.362, A:S.397, A:G.399, A:T.402, A:T.402, A:D.482, A:G.483, A:L.484, A:N.523

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: H.221, S.347 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.221

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 19 residues within 4Å: Chain A: G.226, G.227, G.228, G.229 Chain B: F.361, T.362, S.397, A.398, G.399, S.400, T.402, F.403, E.455, I.456, D.482, G.483, N.523, P.525, F.554 10 PLIP interactions: 2 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:G.227, A:G.229, B:T.362, B:T.362, B:S.397, B:G.399, B:T.402, B:I.456, B:D.482, B:G.483

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, B.W. et al., Structural and biochemical analysis of subunit assembly, DNA recognition and cleavage by a Type IIB restriction-modification enzyme: BsaXI. To Be Published

Release Date

2024-10-30

Peptides

site-specific DNA-methyltransferase (adenine-specific): AB
S.BsaXI: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

site-specific DNA-methyltransferase (adenine-specific)

S.BsaXI

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