SMTL ID : 8w2q.1

BsaXI-DNA complex II

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 22 residues within 4Å: Chain A: F.360, F.361, T.362, P.396, S.397, A.398, G.399, S.400, T.402, F.403, C.454, E.455, I.456, N.457, D.482, G.483, L.484, N.523, P.525, F.554 Chain B: G.227, G.228 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:N.523 Hydrogen bonds: A:T.362, A:T.362, A:T.362, A:S.400, A:T.402, A:I.456, A:N.457, A:D.482, A:G.483, A:L.484, A:N.523, B:G.228

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 23 residues within 4Å: Chain A: G.228 Chain B: K.357, G.358, Q.359, F.360, F.361, T.362, D.395, P.396, S.397, A.398, G.399, F.403, E.455, I.456, D.482, G.483, L.484, S.522, N.523, P.525, F.554 Chain E: A.23 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:N.523 Hydrogen bonds: B:G.358, B:T.362, B:T.362, B:G.399, B:D.482, B:G.483, B:S.522, B:N.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, B.W. et al., Structural and biochemical analysis of subunit assembly, DNA recognition and cleavage by a Type IIB restriction-modification enzyme: BsaXI. To Be Published

Release Date

2024-10-30

Peptides

RM.BsaXI: AB
S.BsaXI: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RM.BsaXI

S.BsaXI

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