SMTL ID : 8wby.1

Cryo-EM structure of ACE2-B0AT1 complex with JX98

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

14 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG.1: 4 residues within 4Å: Chain B: N.49, N.53, T.55, E.57 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: E.22, K.26, N.90, L.91, T.92 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.26 NAG-NAG.3: 4 residues within 4Å: Chain B: Q.81, Q.101, N.103, V.107 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain C: N.53, T.55, E.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.57 NAG-NAG.5: 4 residues within 4Å: Chain C: D.136, N.159, N.690, D.693 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain D: Q.382, N.385, A.386 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 5 residues within 4Å: Chain B: D.136, N.159, N.690, S.692, D.693 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.159 NAG-NAG.8: 3 residues within 4Å: Chain B: F.285, N.432, W.594 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 2 residues within 4Å: Chain B: E.312, N.322 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 2 residues within 4Å: Chain C: E.312, N.322 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 1 residues within 4Å: Chain A: N.385 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 4 residues within 4Å: Chain C: E.22, N.90, T.92, V.93 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain C: N.432, I.436, W.594 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 4 residues within 4Å: Chain C: Q.81, N.103, A.193, N.194 No protein-ligand interaction detected (PLIP)

2 x WM8: 2-(4-chloranyl-3,5-dimethyl-phenoxy)-~{N}-propan-2-yl-ethanamide

WM8.15: 12 residues within 4Å: Chain A: V.72, W.73, P.76, I.153, V.338, L.415, A.416, F.417, F.420, F.437, L.441, L.444 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.73, A:I.153, A:V.338, A:L.415, A:A.416, A:F.417, A:F.420, A:F.437, A:L.441, A:L.444 Hydrogen bonds: A:W.73 WM8.17: 13 residues within 4Å: Chain D: N.71, V.72, W.73, P.76, I.153, L.415, A.416, F.417, F.420, F.437, M.440, L.441, L.444 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:W.73, D:I.153, D:L.415, D:A.416, D:F.417, D:F.420, D:F.437, D:L.441, D:L.444 Hydrogen bonds: D:W.73, D:A.416

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.16: 2 residues within 4Å: Chain A: N.275, T.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.277 NAG.18: 4 residues within 4Å: Chain D: G.83, G.84, P.274, N.275 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., Molecular basis of inhibition of the amino acid transporter B 0 AT1 (SLC6A19). Nat Commun (2024)

Release Date

2024-09-11

Peptides

Sodium-dependent neutral amino acid transporter B(0)AT1: AD
Angiotensin-converting enzyme 2: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent neutral amino acid transporter B(0)AT1

Angiotensin-converting enzyme 2

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