SMTL ID : 8wbz.1

Cryo-EM structure of ACE2-B0AT1 complex with JX225

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

16 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG.1: 2 residues within 4Å: Chain B: N.432, E.433 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain C: N.53, T.55, Q.340 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain C: S.545, N.546 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain C: F.285, N.432, E.433 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain B: N.53, T.55 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain B: A.80, Q.81, Q.101, N.103 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.81 NAG-NAG.7: 2 residues within 4Å: Chain A: F.270, N.275 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain C: D.136, N.159, N.690, D.693 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.159 NAG-NAG.9: 5 residues within 4Å: Chain C: Q.81, N.103, S.106, V.107, H.195 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.195 NAG-NAG.10: 3 residues within 4Å: Chain C: K.26, N.90, T.92 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 1 residues within 4Å: Chain B: N.546 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 2 residues within 4Å: Chain D: N.275, T.277 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain B: N.159, K.689, N.690, D.693 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.159 NAG-NAG.14: 3 residues within 4Å: Chain B: K.26, N.90, T.92 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 1 residues within 4Å: Chain A: N.385 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 2 residues within 4Å: Chain D: N.385, Y.392 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.17: 2 residues within 4Å: Chain A: N.371, R.383 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.383 NAG.18: 4 residues within 4Å: Chain A: N.199, S.209, Q.211, N.493 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.211, A:N.493 NAG.20: 2 residues within 4Å: Chain B: V.316, N.322 No protein-ligand interaction detected (PLIP) NAG.21: 1 residues within 4Å: Chain C: N.322 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.322 NAG.22: 2 residues within 4Å: Chain D: N.199, Q.211 No protein-ligand interaction detected (PLIP) NAG.23: 1 residues within 4Å: Chain D: N.371 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.371

2 x XF0: 2-(4-bromanyl-3-methyl-phenoxy)-~{N}-propyl-ethanamide

XF0.19: 13 residues within 4Å: Chain A: N.71, V.72, W.73, P.76, I.149, L.251, V.338, T.413, L.415, A.416, F.437, M.440, L.441 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.73, A:P.76, A:I.149, A:V.338, A:F.437, A:L.441 Hydrogen bonds: A:W.73, A:T.413 XF0.24: 13 residues within 4Å: Chain D: N.71, V.72, W.73, P.76, L.251, V.334, V.338, T.413, L.415, A.416, F.437, M.440, L.441 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:W.73, D:P.76, D:V.338, D:A.416, D:F.437, D:L.441 Hydrogen bonds: D:W.73, D:A.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., Molecular basis of inhibition of the amino acid transporter B 0 AT1 (SLC6A19). Nat Commun (2024)

Release Date

2024-09-11

Peptides

Sodium-dependent neutral amino acid transporter B(0)AT1: AD
Angiotensin-converting enzyme 2: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent neutral amino acid transporter B(0)AT1

Angiotensin-converting enzyme 2

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