SMTL ID : 8wto.1

Cryo-EM structure of jasmonic acid transporter ABCG16 in outward conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: V.82, K.105, L.107, A.126, S.127, G.128, S.129, G.130, K.131, S.132, T.133 Chain B: T.222, R.230, G.231, I.232, S.233, E.236 Ligands: BEF.2, MG.3 16 PLIP interactions: 11 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.128, A:G.128, A:S.129, A:G.130, A:K.131, A:S.132, A:T.133, A:T.133, B:S.233, B:S.233, B:E.236 Water bridges: A:K.131, A:S.132, B:R.230 Salt bridges: A:K.131, B:R.230 ADP.4: 19 residues within 4Å: Chain A: T.222, R.230, G.231, I.232, S.233, E.236 Chain B: V.82, K.105, L.107, A.126, S.127, G.128, S.129, G.130, K.131, S.132, T.133 Ligands: BEF.5, MG.6 16 PLIP interactions: 5 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:S.233, A:S.233, A:E.236, B:G.128, B:G.128, B:S.129, B:G.130, B:K.131, B:S.132, B:T.133, B:T.133 Water bridges: A:R.230, B:K.131, B:S.132 Salt bridges: A:R.230, B:K.131

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 12 residues within 4Å: Chain A: S.127, G.128, K.131, Q.172, E.257, H.289 Chain B: S.233, G.234, G.235, E.236 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP) BEF.5: 12 residues within 4Å: Chain A: S.233, G.234, G.235, E.236 Chain B: S.127, G.128, K.131, Q.172, E.257, H.289 Ligands: ADP.4, MG.6 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: S.132, Q.172, E.257 Ligands: ADP.1, BEF.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.132, H2O.1, H2O.1 MG.6: 5 residues within 4Å: Chain B: S.132, Q.172, E.257 Ligands: ADP.4, BEF.5 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.132, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

An, N. et al., Cryo-EM structure and molecular mechanism of the jasmonic acid transporter ABCG16. Nat.Plants (2024)

Release Date

2024-10-23

Peptides

ABC transporter G family member 16: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ABC transporter G family member 16

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