SMTL ID : 8wv5.1

C-reactive protein, decamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

20 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.156, A:D.158, A:E.165 CA.2: 5 residues within 4Å: Chain A: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.78, A:E.156, A:D.158 CA.3: 4 residues within 4Å: Chain B: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.156, B:D.158, B:E.165 CA.4: 5 residues within 4Å: Chain B: D.78, N.79, E.156, Q.157, D.158 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.78, B:D.78, B:E.156, B:D.158 CA.5: 4 residues within 4Å: Chain C: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.156, C:D.158, C:E.165 CA.6: 5 residues within 4Å: Chain C: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.78, C:E.156, C:D.158 CA.7: 4 residues within 4Å: Chain D: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.156, D:D.158, D:E.165 CA.8: 5 residues within 4Å: Chain D: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.78, D:E.156, D:D.158 CA.9: 4 residues within 4Å: Chain E: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.156, E:D.158, E:E.165 CA.10: 5 residues within 4Å: Chain E: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.78, E:E.156, E:D.158 CA.11: 4 residues within 4Å: Chain F: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.156, F:D.158, F:E.165 CA.12: 5 residues within 4Å: Chain F: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.78, F:E.156, F:D.158 CA.13: 4 residues within 4Å: Chain G: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.156, G:D.158, G:E.165 CA.14: 5 residues within 4Å: Chain G: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.78, G:E.156, G:D.158 CA.15: 4 residues within 4Å: Chain H: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.156, H:D.158, H:E.165 CA.16: 5 residues within 4Å: Chain H: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.78, H:E.156, H:D.158 CA.17: 4 residues within 4Å: Chain I: E.156, D.158, E.165, Q.168 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.156, I:D.158, I:E.165 CA.18: 5 residues within 4Å: Chain I: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.78, I:E.156, I:D.158 CA.19: 4 residues within 4Å: Chain J: E.156, D.158, E.165, Q.168 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.156, J:D.158, J:E.165, J:E.165 CA.20: 5 residues within 4Å: Chain J: D.78, N.79, E.156, Q.157, D.158 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.78, J:E.156, J:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, S. et al., Factors affecting macromolecule orientations in thin films formed in cryo-EM. Acta Crystallogr D Struct Biol (2024)

Release Date

2024-07-17

Peptides

C-reactive protein(1-205): ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
B

D
C

E
D

F
F

G
G

H
I

I
J

J
H

C-reactive protein(1-205)

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