- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
P3S.2: 20 residues within 4Å:- Chain A: E.177, E.179, E.249, W.250, Q.254, E.256, A.302, S.303, G.304, H.306, R.360, S.365, L.366, A.367, K.378, R.398
- Ligands: ADP.1, MN.3, MN.4, MG.5
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.254, A:A.302, A:K.378, A:R.398, A:R.398
- Salt bridges: A:H.306, A:R.360
P3S.7: 20 residues within 4Å:- Chain B: E.177, E.179, E.249, W.250, Q.254, E.256, A.302, S.303, G.304, H.306, R.360, S.365, L.366, A.367, K.378, R.398
- Ligands: ADP.6, MN.8, MN.9, MG.10
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.366
- Hydrogen bonds: B:E.177, B:E.179, B:Q.254, B:A.302, B:R.398, B:R.398
- Salt bridges: B:H.306, B:R.360
P3S.12: 18 residues within 4Å:- Chain C: E.177, E.179, E.249, Q.254, E.256, A.302, S.303, G.304, H.306, R.360, L.366, A.367, K.378, R.398
- Ligands: ADP.11, MN.13, MN.14, MG.15
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:E.179, C:Q.254, C:A.302, C:G.304, C:K.378, C:R.398, C:R.398
- Salt bridges: C:H.306, C:R.360
P3S.17: 21 residues within 4Å:- Chain D: E.177, E.179, V.216, E.249, W.250, Q.254, E.256, A.302, S.303, G.304, H.306, R.360, S.365, L.366, A.367, K.378, R.398
- Ligands: ADP.16, MN.18, MN.19, MG.20
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:E.179, D:Q.254, D:G.304, D:K.378, D:R.398, D:R.398
- Salt bridges: D:H.306, D:R.360
P3S.22: 22 residues within 4Å:- Chain E: E.177, E.179, E.249, W.250, Q.254, E.256, F.301, A.302, S.303, G.304, H.306, R.360, S.365, L.366, A.367, K.378, E.396, R.398
- Ligands: ADP.21, MN.23, MN.24, MG.25
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:Q.254, E:A.302, E:K.378, E:R.398, E:R.398
- Salt bridges: E:H.306, E:R.360
P3S.27: 23 residues within 4Å:- Chain F: E.177, E.179, V.216, E.249, W.250, Q.254, E.256, F.301, A.302, S.303, G.304, H.306, R.360, S.365, L.366, A.367, K.378, E.396, R.398
- Ligands: ADP.26, MN.28, MN.29, MG.30
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:A.302, F:A.302, F:K.378, F:R.398, F:R.398
- Water bridges: F:Q.254
- Salt bridges: F:H.306, F:R.360
- 12 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 8 residues within 4Å:- Chain A: E.177, H.306, H.308, E.396, R.398
- Ligands: ADP.1, P3S.2, MG.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.177, A:E.177, A:H.306, A:E.396
MN.4: 4 residues within 4Å:- Chain A: E.179, E.249, E.256
- Ligands: P3S.2
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.179, A:E.249, A:E.256
MN.8: 8 residues within 4Å:- Chain B: E.177, H.306, H.308, K.378, E.396, R.398
- Ligands: ADP.6, P3S.7
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.177, B:E.177, B:H.306, B:E.396
MN.9: 7 residues within 4Å:- Chain B: E.177, E.179, E.249, E.256, H.306
- Ligands: P3S.7, MG.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.179, B:E.249, B:E.256
MN.13: 9 residues within 4Å:- Chain C: E.177, H.306, H.308, K.378, E.396, R.398
- Ligands: ADP.11, P3S.12, MG.15
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.177, C:H.306, C:E.396
MN.14: 5 residues within 4Å:- Chain C: E.179, E.249, E.256, H.306
- Ligands: P3S.12
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.179, C:E.249, C:E.256
MN.18: 7 residues within 4Å:- Chain D: E.177, H.306, H.308, E.396, R.398
- Ligands: ADP.16, P3S.17
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.177, D:H.306, D:E.396
MN.19: 4 residues within 4Å:- Chain D: E.179, E.249, E.256
- Ligands: P3S.17
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.179, D:E.249, D:E.249, D:E.256
MN.23: 6 residues within 4Å:- Chain E: E.179, E.249, E.256, H.306
- Ligands: P3S.22, MG.25
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.179, E:E.249, E:E.256, H2O.19
MN.24: 8 residues within 4Å:- Chain E: E.177, H.306, H.308, E.396, R.398
- Ligands: ADP.21, P3S.22, MG.25
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:E.177, E:E.177, E:H.306, E:E.396
MN.28: 8 residues within 4Å:- Chain F: E.177, H.306, H.308, E.396, R.398
- Ligands: ADP.26, P3S.27, MG.30
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.177, F:E.177, F:H.306, F:E.396
MN.29: 7 residues within 4Å:- Chain F: E.177, E.179, E.249, E.256, H.306
- Ligands: P3S.27, MG.30
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:E.179, F:E.249, F:E.256
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 6 residues within 4Å:- Chain A: E.177, E.256, T.258
- Ligands: ADP.1, P3S.2, MN.3
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.177, A:E.256
MG.10: 6 residues within 4Å:- Chain B: E.177, E.256, T.258
- Ligands: ADP.6, P3S.7, MN.9
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.177, B:E.256
MG.15: 6 residues within 4Å:- Chain C: E.177, E.256, T.258
- Ligands: ADP.11, P3S.12, MN.13
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:E.256
MG.20: 5 residues within 4Å:- Chain D: E.177, E.256, T.258
- Ligands: ADP.16, P3S.17
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:E.256
MG.25: 6 residues within 4Å:- Chain E: E.177, E.256
- Ligands: ADP.21, P3S.22, MN.23, MN.24
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:E.177, E:E.256
MG.30: 6 residues within 4Å:- Chain F: E.177, E.256
- Ligands: ADP.26, P3S.27, MN.28, MN.29
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:E.177, F:E.256
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S.T. et al., Discovery of the 1-naphthylamine biodegradation pathway reveals a glutamine synthetase-like protein that catalyzes 1-naphthylamine glutamylation. To Be Published
- Release Date
- 2024-01-03
- Peptides
- Glutamine synthetase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S.T. et al., Discovery of the 1-naphthylamine biodegradation pathway reveals a glutamine synthetase-like protein that catalyzes 1-naphthylamine glutamylation. To Be Published
- Release Date
- 2024-01-03
- Peptides
- Glutamine synthetase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F