SMTL ID : 8x7i.1

Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-1-1-2-1-1-1-mer
Ligands
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ai, H. et al., Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168. Biorxiv (2024)
Release Date
2024-08-07
Peptides
Histone H3.2: AD
Histone H4: BE
Histone H2A type 1-B/E: C
Histone H2A type 1-B/E: F
Histone H2B type 1-K: IJ
Ubiquitin-conjugating enzyme E2 D3: K
E3 ubiquitin-protein ligase RNF168: L
Ubiquitin: M
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
E
B
B
E
F
C
C
F
G
I
D
J
H
K
K
L
L
M
M

Histone H3.2

Histone H4

Toggle Identical (BE)

Histone H2A type 1-B/E

Histone H2A type 1-B/E

Histone H2B type 1-K

Toggle Identical (IJ)

Ubiquitin-conjugating enzyme E2 D3

E3 ubiquitin-protein ligase RNF168

Ubiquitin

Related Entries With Identical Sequence

2k6d.1 | 2kjh.1 | 2n13.1 | 4bbn.1 | 4dhj.3 | 4dhj.6 | 4dhz.2 | 5bnb.1 | 5bnb.2 | 5bnb.3 | 5bnb.4 | 5wvo.1 | 6fx4.1 | 6fx4.2 | 6fyh.1 | 6j99.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6o96.1 | 6uh5.1 | 6ulh.1 | 6ump.1 | 6ums.1 | 6wkr.1 | 6y5e.1 | 7bwd.1 | 7k6p.1 | 7k6q.1 | 7mex.1  more...