SMTL ID : 8x80.1

Structure of leptin-LepR trimer with a small gap

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 3 residues within 4Å: Chain A: G.325, N.327, F.374 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 2 residues within 4Å: Chain B: N.327, F.374 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.3: 4 residues within 4Å: Chain E: G.325, N.327, F.374, N.375 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:F.374

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.4: 4 residues within 4Å: Chain A: N.730, S.732, C.733 Chain B: H.780 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: P.519, N.604 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: F.374, N.375, N.377 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain A: T.441, R.494, N.496, H.497 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: N.706, N.708 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain B: L.729, N.730, C.733, Y.776 Chain E: H.780 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain B: K.516, P.517, L.518, N.604 Ligand excluded by PLIP NAG.11: 5 residues within 4Å: Chain B: F.373, F.374, N.375, L.376, N.377 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain B: Q.443, R.494, N.496 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain B: N.708 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain E: N.730, S.732, C.733, Y.776 Ligand excluded by PLIP NAG.15: 5 residues within 4Å: Chain E: K.516, P.517, L.518, P.519, N.604 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain E: F.374, N.375, L.376, N.377 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain E: Q.443, N.496, H.497, S.501 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain E: N.706, F.707, N.708 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, Y.F. et al., Structural plasticity of human leptin binding to its receptor LepR. Hlife (2023)

Release Date

2024-08-07

Peptides

Leptin receptor: ABE
Leptin: CDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
C

C
E

D
D

F
F

Leptin receptor

Leptin

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