SMTL ID : 8x81.1

Structure of leptin-LepR trimer with a large gap

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: G.325, S.326, N.327, F.374 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.374

19 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: L.729, N.730, S.732, C.733 Chain B: H.780 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain A: K.516, N.604 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain A: F.374, N.375, N.377 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: T.441, N.496 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: N.706, N.708 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain B: N.730, S.732, C.733 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain B: N.604 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain B: N.496, H.497, S.498 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain B: V.656, Q.657, N.677 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain B: N.639, T.682, L.684 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain B: N.708, T.710, M.748, M.796 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain B: N.375, N.377 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain F: L.729, N.730, S.732 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain F: K.516, N.604 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain F: F.374, N.375, L.376, N.377, K.380 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain F: G.325, S.326, N.327, F.374 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain F: N.677 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain F: N.630, N.639 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain F: N.708, T.710 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, Y.F. et al., Structural plasticity of human leptin binding to its receptor LepR. Hlife (2023)

Release Date

2024-08-07

Peptides

Leptin receptor: ABF
Leptin: CDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
C

C
D

D
F

E
E

Leptin receptor

Leptin

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