8xee.1 | SWISS-MODEL Template Library

SMTL ID : 8xee.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1:	17 residues within 4Å: Chain A: F.12, D.13, G.14, I.15, T.17, S.35, E.36, V.37, C.38, D.58, V.59, G.79, P.81, L.102, R.263, S.264, W.265 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:F.12, A:D.13, A:I.15, A:T.17, A:V.37, A:C.38, A:D.58, A:V.59, A:R.263, A:W.265 pi-Stacking: A:F.12, A:F.12
SAH.2:	17 residues within 4Å: Chain D: F.12, D.13, G.14, I.15, T.17, S.35, E.36, V.37, C.38, D.58, V.59, G.79, P.81, L.102, R.263, S.264, W.265 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:F.12, D:I.15, D:T.17, D:V.37, D:C.38, D:D.58, D:V.59, D:R.263, D:R.263, D:W.265, D:W.265 pi-Stacking: D:F.12, D:F.12

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cho, C.C. et al., Molecular mechanisms for DNA methylation defects induced by ICF syndrome-linked mutations in DNMT3B. Protein Sci. (2024)

Release Date

2024-10-23

Peptides

DNA (cytosine-5)-methyltransferase 3B: AD
DNA (cytosine-5)-methyltransferase 3-like: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C