SMTL ID : 8xej.1

Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x DLP: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

DLP.1: 18 residues within 4Å: Chain B: L.44, W.45, L.48, L.55, L.140, P.144, T.147, L.148, I.152, Q.155, S.222, L.224, P.226, V.229, F.233, L.234, T.267, W.309 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.55, B:L.140, B:P.144, B:P.144, B:L.148, B:I.152, B:F.233, B:F.233, B:L.234, B:T.267 Hydrogen bonds: B:Q.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakuragi, T. et al., The role of the C-terminal tail region as a plug to regulate XKR8 lipid scramblase. J.Biol.Chem. (2024)

Release Date

2024-02-28

Peptides

Isoform 2 of Basigin: A
XK-related protein 8: B
Fab heavy chain: C
Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
X

C
H

D
L

Membrane

We predict this structure to be a membrane protein.
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Isoform 2 of Basigin

XK-related protein 8

Fab heavy chain

Fab light chain

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