SMTL ID : 8xge.1

Human Cx36/GJD2 gap junction channel in porcine brain lipids.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

48 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

MC3.1: 8 residues within 4Å: Chain A: P.72, I.73, R.77, Y.78, F.81, L.220 Chain F: T.248, V.252 Ligand excluded by PLIP MC3.2: 4 residues within 4Å: Chain A: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.3: 5 residues within 4Å: Chain A: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.4: 3 residues within 4Å: Chain A: F.223, V.255, F.258 Ligand excluded by PLIP MC3.5: 8 residues within 4Å: Chain B: P.72, I.73, R.77, Y.78, F.81, L.220 Chain C: T.248, V.252 Ligand excluded by PLIP MC3.6: 4 residues within 4Å: Chain B: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.7: 5 residues within 4Å: Chain B: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.8: 3 residues within 4Å: Chain B: F.223, V.255, F.258 Ligand excluded by PLIP MC3.9: 8 residues within 4Å: Chain A: T.248, V.252 Chain C: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.10: 4 residues within 4Å: Chain C: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.11: 5 residues within 4Å: Chain C: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.12: 3 residues within 4Å: Chain C: F.223, V.255, F.258 Ligand excluded by PLIP MC3.13: 8 residues within 4Å: Chain B: T.248, V.252 Chain D: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.14: 4 residues within 4Å: Chain D: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.15: 5 residues within 4Å: Chain D: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.16: 3 residues within 4Å: Chain D: F.223, V.255, F.258 Ligand excluded by PLIP MC3.17: 8 residues within 4Å: Chain D: T.248, V.252 Chain E: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.18: 4 residues within 4Å: Chain E: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.19: 5 residues within 4Å: Chain E: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.20: 3 residues within 4Å: Chain E: F.223, V.255, F.258 Ligand excluded by PLIP MC3.21: 8 residues within 4Å: Chain E: T.248, V.252 Chain F: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.22: 4 residues within 4Å: Chain F: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.23: 5 residues within 4Å: Chain F: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.24: 3 residues within 4Å: Chain F: F.223, V.255, F.258 Ligand excluded by PLIP MC3.25: 8 residues within 4Å: Chain G: P.72, I.73, R.77, Y.78, F.81, L.220 Chain L: T.248, V.252 Ligand excluded by PLIP MC3.26: 4 residues within 4Å: Chain G: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.27: 5 residues within 4Å: Chain G: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.28: 3 residues within 4Å: Chain G: F.223, V.255, F.258 Ligand excluded by PLIP MC3.29: 8 residues within 4Å: Chain G: T.248, V.252 Chain H: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.30: 4 residues within 4Å: Chain H: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.31: 5 residues within 4Å: Chain H: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.32: 3 residues within 4Å: Chain H: F.223, V.255, F.258 Ligand excluded by PLIP MC3.33: 8 residues within 4Å: Chain H: T.248, V.252 Chain I: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.34: 4 residues within 4Å: Chain I: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.35: 5 residues within 4Å: Chain I: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.36: 3 residues within 4Å: Chain I: F.223, V.255, F.258 Ligand excluded by PLIP MC3.37: 8 residues within 4Å: Chain I: T.248, V.252 Chain J: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.38: 4 residues within 4Å: Chain J: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.39: 5 residues within 4Å: Chain J: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.40: 3 residues within 4Å: Chain J: F.223, V.255, F.258 Ligand excluded by PLIP MC3.41: 8 residues within 4Å: Chain J: T.248, V.252 Chain K: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.42: 4 residues within 4Å: Chain K: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.43: 5 residues within 4Å: Chain K: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.44: 3 residues within 4Å: Chain K: F.223, V.255, F.258 Ligand excluded by PLIP MC3.45: 8 residues within 4Å: Chain K: T.248, V.252 Chain L: P.72, I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.46: 4 residues within 4Å: Chain L: Y.78, F.213, G.216, L.220 Ligand excluded by PLIP MC3.47: 5 residues within 4Å: Chain L: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.48: 3 residues within 4Å: Chain L: F.223, V.255, F.258 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer. Nat Commun (2024)

Release Date

2024-11-06

Peptides

Gap junction delta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction delta-2 protein

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