SMTL ID : 8xgf.1

Human Cx36/GJD2 gap junction channel in complex with arachidonic acid.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

84 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

MC3.1: 10 residues within 4Å: Chain A: P.72, I.73, Y.78, F.81, L.220 Chain G: T.248, V.252 Ligands: MC3.2, MC3.5, MC3.51 Ligand excluded by PLIP MC3.2: 6 residues within 4Å: Chain A: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.1 Ligand excluded by PLIP MC3.3: 9 residues within 4Å: Chain A: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.4, MC3.7, MC3.17, MC3.21 Ligand excluded by PLIP MC3.4: 6 residues within 4Å: Chain A: F.223, S.224, T.251, V.255 Ligands: MC3.3, MC3.7 Ligand excluded by PLIP MC3.5: 2 residues within 4Å: Ligands: MC3.1, MC3.51 Ligand excluded by PLIP MC3.7: 2 residues within 4Å: Ligands: MC3.3, MC3.4 Ligand excluded by PLIP MC3.8: 5 residues within 4Å: Chain A: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.9: 10 residues within 4Å: Chain B: P.72, I.73, Y.78, F.81, L.220 Chain J: T.248, V.252 Ligands: MC3.10, MC3.13, MC3.75 Ligand excluded by PLIP MC3.10: 6 residues within 4Å: Chain B: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.9 Ligand excluded by PLIP MC3.11: 9 residues within 4Å: Chain B: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.12, MC3.15, MC3.81, MC3.85 Ligand excluded by PLIP MC3.12: 6 residues within 4Å: Chain B: F.223, S.224, T.251, V.255 Ligands: MC3.11, MC3.15 Ligand excluded by PLIP MC3.13: 2 residues within 4Å: Ligands: MC3.9, MC3.75 Ligand excluded by PLIP MC3.15: 2 residues within 4Å: Ligands: MC3.11, MC3.12 Ligand excluded by PLIP MC3.16: 5 residues within 4Å: Chain B: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.17: 10 residues within 4Å: Chain A: T.248, V.252 Chain C: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.3, MC3.18, MC3.21 Ligand excluded by PLIP MC3.18: 6 residues within 4Å: Chain C: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.17 Ligand excluded by PLIP MC3.19: 9 residues within 4Å: Chain C: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.20, MC3.23, MC3.25, MC3.29 Ligand excluded by PLIP MC3.20: 6 residues within 4Å: Chain C: F.223, S.224, T.251, V.255 Ligands: MC3.19, MC3.23 Ligand excluded by PLIP MC3.21: 2 residues within 4Å: Ligands: MC3.3, MC3.17 Ligand excluded by PLIP MC3.23: 2 residues within 4Å: Ligands: MC3.19, MC3.20 Ligand excluded by PLIP MC3.24: 5 residues within 4Å: Chain C: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.25: 10 residues within 4Å: Chain C: T.248, V.252 Chain D: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.19, MC3.26, MC3.29 Ligand excluded by PLIP MC3.26: 6 residues within 4Å: Chain D: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.25 Ligand excluded by PLIP MC3.27: 9 residues within 4Å: Chain D: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.28, MC3.31, MC3.33, MC3.37 Ligand excluded by PLIP MC3.28: 6 residues within 4Å: Chain D: F.223, S.224, T.251, V.255 Ligands: MC3.27, MC3.31 Ligand excluded by PLIP MC3.29: 2 residues within 4Å: Ligands: MC3.19, MC3.25 Ligand excluded by PLIP MC3.31: 2 residues within 4Å: Ligands: MC3.27, MC3.28 Ligand excluded by PLIP MC3.32: 5 residues within 4Å: Chain D: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.33: 10 residues within 4Å: Chain D: T.248, V.252 Chain E: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.27, MC3.34, MC3.37 Ligand excluded by PLIP MC3.34: 6 residues within 4Å: Chain E: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.33 Ligand excluded by PLIP MC3.35: 9 residues within 4Å: Chain E: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.36, MC3.39, MC3.41, MC3.45 Ligand excluded by PLIP MC3.36: 6 residues within 4Å: Chain E: F.223, S.224, T.251, V.255 Ligands: MC3.35, MC3.39 Ligand excluded by PLIP MC3.37: 2 residues within 4Å: Ligands: MC3.27, MC3.33 Ligand excluded by PLIP MC3.39: 2 residues within 4Å: Ligands: MC3.35, MC3.36 Ligand excluded by PLIP MC3.40: 5 residues within 4Å: Chain E: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.41: 10 residues within 4Å: Chain E: T.248, V.252 Chain F: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.35, MC3.42, MC3.45 Ligand excluded by PLIP MC3.42: 6 residues within 4Å: Chain F: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.41 Ligand excluded by PLIP MC3.43: 9 residues within 4Å: Chain F: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.44, MC3.47, MC3.49, MC3.53 Ligand excluded by PLIP MC3.44: 6 residues within 4Å: Chain F: F.223, S.224, T.251, V.255 Ligands: MC3.43, MC3.47 Ligand excluded by PLIP MC3.45: 2 residues within 4Å: Ligands: MC3.35, MC3.41 Ligand excluded by PLIP MC3.47: 2 residues within 4Å: Ligands: MC3.43, MC3.44 Ligand excluded by PLIP MC3.48: 5 residues within 4Å: Chain F: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.49: 10 residues within 4Å: Chain F: T.248, V.252 Chain G: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.43, MC3.50, MC3.53 Ligand excluded by PLIP MC3.50: 6 residues within 4Å: Chain G: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.49 Ligand excluded by PLIP MC3.51: 9 residues within 4Å: Chain G: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.1, MC3.5, MC3.52, MC3.55 Ligand excluded by PLIP MC3.52: 6 residues within 4Å: Chain G: F.223, S.224, T.251, V.255 Ligands: MC3.51, MC3.55 Ligand excluded by PLIP MC3.53: 2 residues within 4Å: Ligands: MC3.43, MC3.49 Ligand excluded by PLIP MC3.55: 2 residues within 4Å: Ligands: MC3.51, MC3.52 Ligand excluded by PLIP MC3.56: 5 residues within 4Å: Chain G: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.57: 10 residues within 4Å: Chain H: P.72, I.73, Y.78, F.81, L.220 Chain L: T.248, V.252 Ligands: MC3.58, MC3.61, MC3.91 Ligand excluded by PLIP MC3.58: 6 residues within 4Å: Chain H: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.57 Ligand excluded by PLIP MC3.59: 9 residues within 4Å: Chain H: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.60, MC3.63, MC3.65, MC3.69 Ligand excluded by PLIP MC3.60: 6 residues within 4Å: Chain H: F.223, S.224, T.251, V.255 Ligands: MC3.59, MC3.63 Ligand excluded by PLIP MC3.61: 2 residues within 4Å: Ligands: MC3.57, MC3.91 Ligand excluded by PLIP MC3.63: 2 residues within 4Å: Ligands: MC3.59, MC3.60 Ligand excluded by PLIP MC3.64: 5 residues within 4Å: Chain H: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.65: 10 residues within 4Å: Chain H: T.248, V.252 Chain I: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.59, MC3.66, MC3.69 Ligand excluded by PLIP MC3.66: 6 residues within 4Å: Chain I: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.65 Ligand excluded by PLIP MC3.67: 9 residues within 4Å: Chain I: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.68, MC3.71, MC3.73, MC3.77 Ligand excluded by PLIP MC3.68: 6 residues within 4Å: Chain I: F.223, S.224, T.251, V.255 Ligands: MC3.67, MC3.71 Ligand excluded by PLIP MC3.69: 2 residues within 4Å: Ligands: MC3.59, MC3.65 Ligand excluded by PLIP MC3.71: 2 residues within 4Å: Ligands: MC3.67, MC3.68 Ligand excluded by PLIP MC3.72: 5 residues within 4Å: Chain I: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.73: 10 residues within 4Å: Chain I: T.248, V.252 Chain J: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.67, MC3.74, MC3.77 Ligand excluded by PLIP MC3.74: 6 residues within 4Å: Chain J: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.73 Ligand excluded by PLIP MC3.75: 9 residues within 4Å: Chain J: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.9, MC3.13, MC3.76, MC3.79 Ligand excluded by PLIP MC3.76: 6 residues within 4Å: Chain J: F.223, S.224, T.251, V.255 Ligands: MC3.75, MC3.79 Ligand excluded by PLIP MC3.77: 2 residues within 4Å: Ligands: MC3.67, MC3.73 Ligand excluded by PLIP MC3.79: 2 residues within 4Å: Ligands: MC3.75, MC3.76 Ligand excluded by PLIP MC3.80: 5 residues within 4Å: Chain J: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.81: 10 residues within 4Å: Chain B: T.248, V.252 Chain K: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.11, MC3.82, MC3.85 Ligand excluded by PLIP MC3.82: 6 residues within 4Å: Chain K: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.81 Ligand excluded by PLIP MC3.83: 9 residues within 4Å: Chain K: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.84, MC3.87, MC3.89, MC3.93 Ligand excluded by PLIP MC3.84: 6 residues within 4Å: Chain K: F.223, S.224, T.251, V.255 Ligands: MC3.83, MC3.87 Ligand excluded by PLIP MC3.85: 2 residues within 4Å: Ligands: MC3.11, MC3.81 Ligand excluded by PLIP MC3.87: 2 residues within 4Å: Ligands: MC3.83, MC3.84 Ligand excluded by PLIP MC3.88: 5 residues within 4Å: Chain K: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP MC3.89: 10 residues within 4Å: Chain K: T.248, V.252 Chain L: P.72, I.73, Y.78, F.81, L.220 Ligands: MC3.83, MC3.90, MC3.93 Ligand excluded by PLIP MC3.90: 6 residues within 4Å: Chain L: Y.78, F.213, G.216, F.219, L.220 Ligands: MC3.89 Ligand excluded by PLIP MC3.91: 9 residues within 4Å: Chain L: T.248, T.251, V.252, V.255, F.256 Ligands: MC3.57, MC3.61, MC3.92, MC3.95 Ligand excluded by PLIP MC3.92: 6 residues within 4Å: Chain L: F.223, S.224, T.251, V.255 Ligands: MC3.91, MC3.95 Ligand excluded by PLIP MC3.93: 2 residues within 4Å: Ligands: MC3.83, MC3.89 Ligand excluded by PLIP MC3.95: 2 residues within 4Å: Ligands: MC3.91, MC3.92 Ligand excluded by PLIP MC3.96: 5 residues within 4Å: Chain L: T.88, C.92, F.198, I.201, F.205 Ligand excluded by PLIP

12 x ACD: ARACHIDONIC ACID(Non-covalent)

ACD.6: 13 residues within 4Å: Chain A: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Chain G: L.36, I.40 Ligands: ACD.22, ACD.54 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain G Hydrophobic interactions: A:A.39, A:I.83, G:I.40 ACD.14: 13 residues within 4Å: Chain B: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Chain J: L.36, I.40 Ligands: ACD.78, ACD.86 3 PLIP interactions: 1 interactions with chain J, 2 interactions with chain B Hydrophobic interactions: J:I.40, B:A.39, B:I.83 ACD.22: 13 residues within 4Å: Chain A: L.36, I.40 Chain C: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.6, ACD.30 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:A.39, C:I.83, A:I.40 ACD.30: 13 residues within 4Å: Chain C: L.36, I.40 Chain D: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.22, ACD.38 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:A.39, D:I.83, C:I.40 ACD.38: 13 residues within 4Å: Chain D: L.36, I.40 Chain E: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.30, ACD.46 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:I.40, E:A.39, E:I.83 ACD.46: 13 residues within 4Å: Chain E: L.36, I.40 Chain F: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.38, ACD.54 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:A.39, F:I.83, E:I.40 ACD.54: 13 residues within 4Å: Chain F: L.36, I.40 Chain G: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.6, ACD.46 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:A.39, G:I.83, F:I.40 ACD.62: 13 residues within 4Å: Chain H: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Chain L: L.36, I.40 Ligands: ACD.70, ACD.94 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain L Hydrophobic interactions: H:A.39, H:I.83, L:I.40 ACD.70: 13 residues within 4Å: Chain H: L.36, I.40 Chain I: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.62, ACD.78 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: H:I.40, I:A.39, I:I.83 ACD.78: 13 residues within 4Å: Chain I: L.36, I.40 Chain J: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.14, ACD.70 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain J Hydrophobic interactions: I:I.40, J:A.39, J:I.83 ACD.86: 13 residues within 4Å: Chain B: L.36, I.40 Chain K: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.14, ACD.94 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain B Hydrophobic interactions: K:A.39, K:I.83, B:I.40 ACD.94: 13 residues within 4Å: Chain K: L.36, I.40 Chain L: I.35, V.38, A.39, I.40, V.80, I.83, I.84, C.87, L.91 Ligands: ACD.62, ACD.86 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:A.39, L:I.83, K:I.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer. Nat Commun (2024)

Release Date

2024-11-06

Peptides

Gap junction delta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
J

C
B

D
C

E
D

F
E

G
F

H
G

I
H

J
I

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Gap junction delta-2 protein

Related Entries With Identical Sequence