SMTL ID : 8xh9.1

Human Cx36/GJD2 (Ala14 deletion mutant) gap junction channel prepared with mefloquine, showing no bound mefloquine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

60 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

MC3.1: 8 residues within 4Å: Chain A: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.2, MC3.3 Ligand excluded by PLIP MC3.2: 7 residues within 4Å: Chain A: T.250, V.251, V.254, F.255 Ligands: MC3.1, MC3.3, MC3.9 Ligand excluded by PLIP MC3.3: 4 residues within 4Å: Chain A: V.254, A.258 Ligands: MC3.1, MC3.2 Ligand excluded by PLIP MC3.4: 9 residues within 4Å: Chain A: I.72, R.76, Y.77, F.80, L.219 Chain F: E.248, V.251, F.252 Ligands: MC3.27 Ligand excluded by PLIP MC3.5: 3 residues within 4Å: Chain A: G.215, F.218, L.219 Ligand excluded by PLIP MC3.6: 8 residues within 4Å: Chain B: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.7, MC3.8 Ligand excluded by PLIP MC3.7: 7 residues within 4Å: Chain B: T.250, V.251, V.254, F.255 Ligands: MC3.6, MC3.8, MC3.14 Ligand excluded by PLIP MC3.8: 4 residues within 4Å: Chain B: V.254, A.258 Ligands: MC3.6, MC3.7 Ligand excluded by PLIP MC3.9: 9 residues within 4Å: Chain A: E.248, V.251, F.252 Chain B: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.2 Ligand excluded by PLIP MC3.10: 3 residues within 4Å: Chain B: G.215, F.218, L.219 Ligand excluded by PLIP MC3.11: 8 residues within 4Å: Chain C: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.12, MC3.13 Ligand excluded by PLIP MC3.12: 7 residues within 4Å: Chain C: T.250, V.251, V.254, F.255 Ligands: MC3.11, MC3.13, MC3.19 Ligand excluded by PLIP MC3.13: 4 residues within 4Å: Chain C: V.254, A.258 Ligands: MC3.11, MC3.12 Ligand excluded by PLIP MC3.14: 9 residues within 4Å: Chain B: E.248, V.251, F.252 Chain C: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.7 Ligand excluded by PLIP MC3.15: 3 residues within 4Å: Chain C: G.215, F.218, L.219 Ligand excluded by PLIP MC3.16: 8 residues within 4Å: Chain D: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.17, MC3.18 Ligand excluded by PLIP MC3.17: 8 residues within 4Å: Chain D: T.250, V.251, V.254, F.255 Chain E: F.80 Ligands: MC3.16, MC3.18, MC3.24 Ligand excluded by PLIP MC3.18: 4 residues within 4Å: Chain D: V.254, A.258 Ligands: MC3.16, MC3.17 Ligand excluded by PLIP MC3.19: 9 residues within 4Å: Chain C: E.248, V.251, F.252 Chain D: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.12 Ligand excluded by PLIP MC3.20: 3 residues within 4Å: Chain D: G.215, F.218, L.219 Ligand excluded by PLIP MC3.21: 8 residues within 4Å: Chain E: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.22, MC3.23 Ligand excluded by PLIP MC3.22: 7 residues within 4Å: Chain E: T.250, V.251, V.254, F.255 Ligands: MC3.21, MC3.23, MC3.29 Ligand excluded by PLIP MC3.23: 4 residues within 4Å: Chain E: V.254, A.258 Ligands: MC3.21, MC3.22 Ligand excluded by PLIP MC3.24: 9 residues within 4Å: Chain D: E.248, V.251, F.252 Chain E: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.17 Ligand excluded by PLIP MC3.25: 3 residues within 4Å: Chain E: G.215, F.218, L.219 Ligand excluded by PLIP MC3.26: 8 residues within 4Å: Chain F: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.27, MC3.28 Ligand excluded by PLIP MC3.27: 8 residues within 4Å: Chain A: F.80 Chain F: T.250, V.251, V.254, F.255 Ligands: MC3.4, MC3.26, MC3.28 Ligand excluded by PLIP MC3.28: 4 residues within 4Å: Chain F: V.254, A.258 Ligands: MC3.26, MC3.27 Ligand excluded by PLIP MC3.29: 9 residues within 4Å: Chain E: E.248, V.251, F.252 Chain F: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.22 Ligand excluded by PLIP MC3.30: 3 residues within 4Å: Chain F: G.215, F.218, L.219 Ligand excluded by PLIP MC3.31: 8 residues within 4Å: Chain G: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.32, MC3.33 Ligand excluded by PLIP MC3.32: 8 residues within 4Å: Chain G: T.250, V.251, V.254, F.255 Chain H: F.80 Ligands: MC3.31, MC3.33, MC3.39 Ligand excluded by PLIP MC3.33: 4 residues within 4Å: Chain G: V.254, A.258 Ligands: MC3.31, MC3.32 Ligand excluded by PLIP MC3.34: 9 residues within 4Å: Chain G: I.72, R.76, Y.77, F.80, L.219 Chain L: E.248, V.251, F.252 Ligands: MC3.57 Ligand excluded by PLIP MC3.35: 3 residues within 4Å: Chain G: G.215, F.218, L.219 Ligand excluded by PLIP MC3.36: 8 residues within 4Å: Chain H: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.37, MC3.38 Ligand excluded by PLIP MC3.37: 8 residues within 4Å: Chain H: T.250, V.251, V.254, F.255 Chain I: F.80 Ligands: MC3.36, MC3.38, MC3.44 Ligand excluded by PLIP MC3.38: 4 residues within 4Å: Chain H: V.254, A.258 Ligands: MC3.36, MC3.37 Ligand excluded by PLIP MC3.39: 9 residues within 4Å: Chain G: E.248, V.251, F.252 Chain H: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.32 Ligand excluded by PLIP MC3.40: 3 residues within 4Å: Chain H: G.215, F.218, L.219 Ligand excluded by PLIP MC3.41: 8 residues within 4Å: Chain I: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.42, MC3.43 Ligand excluded by PLIP MC3.42: 8 residues within 4Å: Chain I: T.250, V.251, V.254, F.255 Chain J: F.80 Ligands: MC3.41, MC3.43, MC3.49 Ligand excluded by PLIP MC3.43: 4 residues within 4Å: Chain I: V.254, A.258 Ligands: MC3.41, MC3.42 Ligand excluded by PLIP MC3.44: 9 residues within 4Å: Chain H: E.248, V.251, F.252 Chain I: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.37 Ligand excluded by PLIP MC3.45: 3 residues within 4Å: Chain I: G.215, F.218, L.219 Ligand excluded by PLIP MC3.46: 8 residues within 4Å: Chain J: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.47, MC3.48 Ligand excluded by PLIP MC3.47: 7 residues within 4Å: Chain J: T.250, V.251, V.254, F.255 Ligands: MC3.46, MC3.48, MC3.54 Ligand excluded by PLIP MC3.48: 4 residues within 4Å: Chain J: V.254, A.258 Ligands: MC3.46, MC3.47 Ligand excluded by PLIP MC3.49: 9 residues within 4Å: Chain I: E.248, V.251, F.252 Chain J: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.42 Ligand excluded by PLIP MC3.50: 3 residues within 4Å: Chain J: G.215, F.218, L.219 Ligand excluded by PLIP MC3.51: 8 residues within 4Å: Chain K: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.52, MC3.53 Ligand excluded by PLIP MC3.52: 7 residues within 4Å: Chain K: T.250, V.251, V.254, F.255 Ligands: MC3.51, MC3.53, MC3.59 Ligand excluded by PLIP MC3.53: 4 residues within 4Å: Chain K: V.254, A.258 Ligands: MC3.51, MC3.52 Ligand excluded by PLIP MC3.54: 9 residues within 4Å: Chain J: E.248, V.251, F.252 Chain K: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.47 Ligand excluded by PLIP MC3.55: 3 residues within 4Å: Chain K: G.215, F.218, L.219 Ligand excluded by PLIP MC3.56: 8 residues within 4Å: Chain L: F.222, S.223, T.250, V.254, F.257, A.258 Ligands: MC3.57, MC3.58 Ligand excluded by PLIP MC3.57: 8 residues within 4Å: Chain G: F.80 Chain L: T.250, V.251, V.254, F.255 Ligands: MC3.34, MC3.56, MC3.58 Ligand excluded by PLIP MC3.58: 4 residues within 4Å: Chain L: V.254, A.258 Ligands: MC3.56, MC3.57 Ligand excluded by PLIP MC3.59: 9 residues within 4Å: Chain K: E.248, V.251, F.252 Chain L: I.72, R.76, Y.77, F.80, L.219 Ligands: MC3.52 Ligand excluded by PLIP MC3.60: 3 residues within 4Å: Chain L: G.215, F.218, L.219 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer. Nat Commun (2024)

Release Date

2024-11-06

Peptides

Gap junction delta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction delta-2 protein

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