SMTL ID : 8xlf.1

Structure of chimeric RyR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.3893, A:E.3967, A:T.5001 CA.5: 4 residues within 4Å: Chain D: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.3893, D:E.3967, D:T.5001 CA.9: 4 residues within 4Å: Chain G: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.3893, G:E.3967, G:T.5001 CA.13: 4 residues within 4Å: Chain J: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.3893, J:E.3967, J:T.5001

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.4958, C.4961, H.4978, H.4983 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.4961, A:H.4983 ZN.6: 4 residues within 4Å: Chain D: C.4958, C.4961, H.4978, H.4983 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.4961, D:H.4983 ZN.10: 4 residues within 4Å: Chain G: C.4958, C.4961, H.4978, H.4983 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:C.4961, G:H.4983 ZN.14: 4 residues within 4Å: Chain J: C.4958, C.4961, H.4978, H.4983 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.4961, J:H.4983

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 6 residues within 4Å: Chain A: M.4954, C.4958, F.4959, I.4960, T.4979, L.4985 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.4979, A:L.4985 ATP.7: 6 residues within 4Å: Chain D: M.4954, C.4958, F.4959, I.4960, T.4979, L.4985 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.4979, D:L.4985 ATP.11: 6 residues within 4Å: Chain G: M.4954, C.4958, F.4959, I.4960, T.4979, L.4985 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:T.4979, G:L.4985 ATP.15: 6 residues within 4Å: Chain J: M.4954, C.4958, F.4959, I.4960, T.4979, L.4985 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:T.4979, J:L.4985

4 x CFF: CAFFEINE(Non-covalent)

CFF.4: 8 residues within 4Å: Chain A: F.3753, E.4239, I.4242, F.4671, W.4716, I.4996, W.5011, Y.5014 2 PLIP interactions: 2 interactions with chain A pi-Stacking: A:W.4716, A:W.4716 CFF.8: 8 residues within 4Å: Chain D: F.3753, E.4239, I.4242, F.4671, W.4716, I.4996, W.5011, Y.5014 2 PLIP interactions: 2 interactions with chain D pi-Stacking: D:W.4716, D:W.4716 CFF.12: 8 residues within 4Å: Chain G: F.3753, E.4239, I.4242, F.4671, W.4716, I.4996, W.5011, Y.5014 2 PLIP interactions: 2 interactions with chain G pi-Stacking: G:W.4716, G:W.4716 CFF.16: 8 residues within 4Å: Chain J: F.3753, E.4239, I.4242, F.4671, W.4716, I.4996, W.5011, Y.5014 2 PLIP interactions: 2 interactions with chain J pi-Stacking: J:W.4716, J:W.4716

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, L. et al., Cryo-EM structures of ryanodine receptors and diamide insecticides reveal the mechanisms of selectivity and resistance. Nat Commun (2024)

Release Date

2024-10-30

Peptides

Ryanodine receptor 1: ADGJ
Calmodulin-1: BEHK
Peptidyl-prolyl cis-trans isomerase FKBP1B: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

G
C

J
D

B
L

E
I

H
J

K
K

C
H

F
E

I
F

L
G

Membrane

We predict this structure to be a membrane protein.
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Ryanodine receptor 1

Calmodulin-1

Peptidyl-prolyl cis-trans isomerase FKBP1B

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