SMTL ID : 8xls.1

PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)
138 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
2 x PQN: PHYLLOQUINONE(Non-covalent)
3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
20 x BCR: BETA-CAROTENE(Non-covalent)
7 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
4 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)
89 x UNL: UNKNOWN LIGAND(Non-functional Binders)
1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
1 x 5X6: (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(Non-covalent)
7 x DD6: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(Non-covalent)
1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
7 x KC1: Chlorophyll c1(Non-covalent)
15 x A86: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kato, K. et al., Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex. Elife (2024)
Release Date
2024-10-30
Peptides
Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit II: D
Photosystem I reaction center subunit IV: E
Photosystem I reaction center subunit III: F
Photosystem I reaction center subunit VIII: G
Photosystem I reaction center subunit IX: H
Photosystem I reaction center subunit XI: I
Photosystem I reaction center subunit XII: J
Photosystem I reaction center subunit Psa29: K
Unknown protein: L
Fucoxanthin chlorophyll a/c-binding protein RedCAP: M
Fucoxanthin chl a/c light-harvesting protein: N
Pt17531-like protein: O
Fucoxanthin chl a/c light-harvesting protein, major type: P
Fucoxanthin chlorophyll a/c-binding protein Lhcq8: Q
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
I
H
J
I
L
J
M
K
W
L
u
M
1
N
2
O
3
P
4
Q
5
Membrane
We predict this structure to be a membrane protein.

Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II

Photosystem I reaction center subunit IV

Photosystem I reaction center subunit III

Photosystem I reaction center subunit VIII

Photosystem I reaction center subunit IX

Photosystem I reaction center subunit XI

Photosystem I reaction center subunit XII

Photosystem I reaction center subunit Psa29

Unknown protein

Fucoxanthin chlorophyll a/c-binding protein RedCAP

Fucoxanthin chl a/c light-harvesting protein

Pt17531-like protein

Fucoxanthin chl a/c light-harvesting protein, major type

Fucoxanthin chlorophyll a/c-binding protein Lhcq8

Related Entries With Identical Sequence

1fka.1 | 4uq8.1 | 5luf.1 | 6j54.1 | 6j5a.1 | 6j5i.1 | 6j5j.1 | 6j5k.17 | 6j5k.47 | 6j5k.77 | 6j5k.107 | 6l4u.1 | 6m6g.1 | 6m6g.2 | 6sri.1