SMTL ID : 4uq8.1

Electron cryo-microscopy of bovine Complex I

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 4.95 Å

Oligo State

hetero-oligomer

Ligands

6 x SF4: IRON/SULFUR CLUSTER(Covalent)(Non-covalent)

SF4.1: 9 residues within 4Å: Chain B: X.27, C.28, C.29, X.64, X.91, X.92, C.93, C.123, X.124 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.28, B:C.29, B:C.93, B:C.123 SF4.3: 9 residues within 4Å: Chain F: X.328, C.329, X.330, X.331, C.332, C.335, X.374, C.375, X.378 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.329, F:C.332, F:C.335, F:C.375 SF4.4: 8 residues within 4Å: Chain G: H.94, X.97, C.98, C.101, X.103, C.107, X.110, X.199 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:H.94, G:C.98, G:C.101, G:C.107 SF4.5: 8 residues within 4Å: Chain G: C.147, X.148, X.149, C.150, X.152, C.153, C.197, X.201 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.147, G:C.150, G:C.153, G:C.197 SF4.7: 9 residues within 4Å: Chain I: C.73, X.75, C.102, X.103, X.104, C.105, X.106, X.107, C.108 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.73, I:C.102, I:C.105, I:C.108 SF4.8: 9 residues within 4Å: Chain I: C.63, X.64, X.65, C.66, X.67, X.68, C.69, C.112, X.116 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.63, I:C.66, I:C.69, I:C.112

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 10 residues within 4Å: Chain E: C.84, X.86, X.88, C.89, C.125, X.126, X.127, X.128, C.129 Chain F: X.72 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.84, E:C.89, E:C.125, E:C.129 FES.6: 9 residues within 4Å: Chain G: X.33, C.34, X.42, X.44, C.45, X.46, X.47, C.48, C.62 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.34, G:C.45, G:C.48, G:C.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., Architecture of Mammalian Respiratory Complex I. Nature (2014)

Release Date

2014-10-01

Peptides

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 3: A
NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL: B
NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 3, MITOCHONDRIAL: C
NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL: D
NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 2, MITOCHONDRIAL: E
NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 1, MITOCHONDRIAL: F
NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL: G
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 1: H
NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 8, MITOCHONDRIAL: I
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 6: J
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 4L: K
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 5: L
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 4: M
NADH UBIQUINONE OXIDOREDUCTASE CHAIN 2: N
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 10: O
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL: P
NADH DEHYDROGENASE [UBIQUINONE] SUBUNIT 4: Q
NADH DEHYDROGENASE [UBIQUINONE] SUBUNIT 6: R
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 2: S
ACYL CARRIER PROTEIN, MITOCHONDRIAL: T
NADH UBIQUINONE DEHYDROGENASE: U
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 5: V
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 6: W
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 8: X
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 11: Y
NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13: Z
NADH UBIQUINONE OXIDOREDUCTASE: 0
NADH UBIQUINONE OXIDOREDUCTASE: 1
NADH UBIQUINONE OXIDOREDUCTASE: 2m
NADH UBIQUINONE OXIDOREDUCTASE: 3
NADH UBIQUINONE OXIDOREDUCTASE: 4
NADH UBIQUINONE OXIDOREDUCTASE: 578
NADH UBIQUINONE OXIDOREDUCTASE: 6
NADH UBIQUINONE OXIDOREDUCTASE: 9b
NADH UBIQUINONE OXIDOREDUCTASE: afi
NADH UBIQUINONE OXIDOREDUCTASE: c
NADH UBIQUINONE OXIDOREDUCTASE: d
NADH UBIQUINONE OXIDOREDUCTASE: e
NADH UBIQUINONE OXIDOREDUCTASE: g
NADH UBIQUINONE OXIDOREDUCTASE: h
NADH UBIQUINONE OXIDOREDUCTASE: j
NADH UBIQUINONE OXIDOREDUCTASE: k
NADH UBIQUINONE OXIDOREDUCTASE: l

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

m
w

3
d

4
e

5
f

7
h

8
i

6
g

9
j

b
l

a
k

f
p

i
s

c
m

d
n

e
o

g
q

h
r

j
t

k
u

l
v

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 3

NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL

NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 3, MITOCHONDRIAL

NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL

NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 2, MITOCHONDRIAL

NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 1, MITOCHONDRIAL

NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 1

NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 8, MITOCHONDRIAL

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 6

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 4L

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 5

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 4

NADH UBIQUINONE OXIDOREDUCTASE CHAIN 2

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 10

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL

NADH DEHYDROGENASE [UBIQUINONE] SUBUNIT 4

NADH DEHYDROGENASE [UBIQUINONE] SUBUNIT 6

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 2

ACYL CARRIER PROTEIN, MITOCHONDRIAL

NADH UBIQUINONE DEHYDROGENASE

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 5

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 6

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 8

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT; 11

NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

NADH UBIQUINONE OXIDOREDUCTASE

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