SMTL ID : 8xlz.1

beta-1,4-galacosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 18 residues within 4Å: Chain A: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.66, G.69, C.70, S.73, E.93, D.94, D.95, Q.213 Ligands: MG.2, MG.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.13 Hydrogen bonds: A:I.11, A:I.13, A:F.40, A:S.73, A:D.94, A:D.95 Water bridges: A:R.19, A:Q.213, A:Q.213, A:Q.213 Salt bridges: A:R.19 UDP.5: 18 residues within 4Å: Chain B: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.66, G.69, C.70, S.73, E.93, D.94, D.95, Q.213 Ligands: MG.6, MG.7 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.13 Hydrogen bonds: B:I.11, B:I.13, B:F.40, B:F.40, B:S.73, B:D.94 Water bridges: B:E.93, B:D.95, B:D.156 Salt bridges: B:R.19

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.95, Q.213 Ligands: UDP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.95, H2O.1, H2O.3 MG.3: 2 residues within 4Å: Chain A: T.159 Ligands: UDP.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: D.156 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: D.95, Q.213 Ligands: UDP.5 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.95, H2O.5, H2O.5 MG.7: 4 residues within 4Å: Chain B: E.93, W.157, T.159 Ligands: UDP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, G. et al., Crystal structure and structure-guided tunnel engineering in a bacterial beta-1,4-galactosyltransferase. Int.J.Biol.Macromol. (2024)

Release Date

2024-12-11

Peptides

Glycosyltransferase family 25 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase family 25 protein

Related Entries With Identical Sequence