SMTL ID : 8xoc.1

beta-1,4-galacosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

2 x GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE(Non-covalent)

GDU.1: 24 residues within 4Å: Chain A: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.66, E.67, G.69, C.70, S.73, E.93, D.94, D.95, D.156, W.157, G.158, T.159, I.187, D.188, Q.213 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.13 Hydrogen bonds: A:I.11, A:I.13, A:F.40, A:E.67, A:S.73, A:D.94, A:D.94, A:T.159, A:T.159, A:Q.213, A:Q.213 Water bridges: A:R.19, A:R.19, A:R.19, A:I.187, A:Q.213 Salt bridges: A:R.19 GDU.3: 21 residues within 4Å: Chain B: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.66, G.69, C.70, S.73, E.93, D.94, D.95, D.156, W.157, T.159, D.188, Q.213 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.13 Hydrogen bonds: B:I.11, B:I.13, B:F.40, B:F.40, B:S.73, B:E.93, B:D.94, B:D.95, B:D.156, B:D.188, B:Q.213, B:Q.213 Water bridges: B:E.93 Salt bridges: B:R.19

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.95, Q.213 Ligands: GDU.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.95, H2O.1, H2O.2 MG.4: 3 residues within 4Å: Chain B: D.95, Q.213 Ligands: GDU.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.95, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, G. et al., Crystal structure and structure-guided tunnel engineering in a bacterial beta-1,4-galactosyltransferase. Int.J.Biol.Macromol. (2024)

Release Date

2024-12-11

Peptides

Glycosyltransferase family 25 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase family 25 protein

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