SMTL ID : 8xv6.1 (1 other biounit)

Crystal structure of PHD domain of UHRF1 in complex with mStella peptide (residues 85-119)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 10 residues within 4Å: Chain A: P.8, S.9, C.10, D.15, C.24 Chain B: L.21, I.24, E.25 Ligands: SCN.3, ZN.6 No protein-ligand interaction detected (PLIP) SCN.2: 3 residues within 4Å: Chain A: H.27, E.70 Ligands: ZN.9 No protein-ligand interaction detected (PLIP) SCN.3: 7 residues within 4Å: Chain A: D.15, C.24 Chain B: R.20, L.21, I.24 Ligands: SCN.1, ZN.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.32

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: H.12, R.22, V.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.22

5 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: C.10, C.13, C.21, C.24 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.21, A:C.24 ZN.6: 7 residues within 4Å: Chain A: C.10, D.15, C.24 Chain B: L.21, I.24 Ligands: SCN.1, SCN.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.15, A:C.24 ZN.7: 4 residues within 4Å: Chain A: C.26, C.29, H.49, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:H.49, A:C.52 ZN.8: 4 residues within 4Å: Chain A: C.41, C.44, C.68, C.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:C.68, A:C.71 ZN.9: 3 residues within 4Å: Chain A: H.27, E.70 Ligands: SCN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.27, A:E.70, A:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, X. et al., Crystal structure of PHD domain of UHRF1 in complex with mStella peptide (residues 85-119). To Be Published

Release Date

2024-11-06

Peptides

E3 ubiquitin-protein ligase UHRF1: A
Developmental pluripotency-associated protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UHRF1

Developmental pluripotency-associated protein 3

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